Skip to main content
Dataset Overview | National Centers for Environmental Information (NCEI)

Amino acid compound specific isotope analyses of abyssal deposit feeders, gut contents, and surrounding surface sediments collected on R/V Atlantis cruise AT42-10 and R/V Western Flyer Pulse 72 in the eastern North Pacific in 2019 (NCEI Accession 0294397)

browse graphicPreview graphic
This dataset contains biological, chemical, and survey - biological data collected on Alvin, Doc Ricketts, R/V Atlantis, and R/V Western Flyer during cruises AT42-10 and Pulse 72 and deployments AT42-10_Alvin_dives and Pulse72_ROV_dives in the North Pacific Ocean from 2019-05-01 to 2019-10-24. These data include d13C, d13C measured in biota, d15N, d15N measured in biota, and species. The instruments used to collect these data include Alvin tube core, CHN Elemental Analyzer, Continuous Flow Interface for Mass Spectrometers, Gas Chromatograph, Isotope-ratio Mass Spectrometer, and Remotely Operated Vehicle. These data were collected by Brian N. Popp and Jeffrey C. Drazen of University of Hawaii at Manoa as part of the "Collaborative Research: Assessing the relative importance of small vs large particles as sources of nutrition to abyssal communities (Abyssal food web)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2021-06-03.

The following is the text of the dataset description provided by BCO-DMO:

AA-CSIA of abyssal deposit feeders, their gut contents and the surrounding surface sediments collected on R/V Atlantis cruise AT4210 and R/V Western Flyer cruise Pulse 72

Dataset Description:
Acquisition Description:
Sediment cores and megafauna were collected in May and October 2019 using the HOV Alvin and the ROV Doc Ricketts, respectively. Upon retrieval to the surface, samples were placed in a cool room (5º C) for further processing. Sediment cores of 7 centimeters diameter were sliced and the surface sediments (0–0.5 cm) were placed in petri dishes and stored frozen at -80º C. Specimens of megafauna were weighed and measured, then dissected using a scalpel. We made a longitudinal cut along the digestive tract and took a sample of the foregut and hindgut contents, avoiding gut tissue. Then we removed the remaining guts and took a sample from cleaned body tissue, or in the case of echinoids, from the test. All samples were placed in cryovials and frozen in liquid nitrogen, and subsequently stored at -80º C. In the laboratory, samples of sediments, gut contents and body tissue were freeze dried and ground to a homogenous powder using mortar and pestle.

For analysis of bulk nitrogen and carbon isotopic composition, samples were placed in silver capsules in the following amounts: ~ 0.7 milligrams of body tissue from holothurians, 3 miligrams of body tissue from echinoids, ~ 5 miligrams of gut content, and ~ 20 miligrams of sediment. Samples were acidified to remove carbonates with 1M HCl, which was added dropwise until bubbling ceased, then dried at 60ºC and packed.

For δ15N and δ13C analysis of individual amino acids, samples were analyzed following the methods of Hannides et al. (2013). For the analysis of carbon isotope composition, we also derivatized and analyzed under the same conditions a sample containing a set of 13 pure amino acids. δ13C values were corrected based on the analysis of that set of pure amino acids (Silfer et al. 1991; Arthur et al. 2014).
  • Cite as: Drazen, Jeffrey C.; Popp, Brian N. (2024). Amino acid compound specific isotope analyses of abyssal deposit feeders, gut contents, and surrounding surface sediments collected on R/V Atlantis cruise AT42-10 and R/V Western Flyer Pulse 72 in the eastern North Pacific in 2019 (NCEI Accession 0294397). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0294397. Accessed [date].
gov.noaa.nodc:0294397
Download Data
  • HTTPS (download)
    Navigate directly to the URL for data access and direct download.
  • FTP (download)
    These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats
  • TSV
Ordering Instructions Contact NCEI for other distribution options and instructions.
Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 2019-05-01 to 2019-10-24
Spatial Bounding Box Coordinates
West: -123.06
East: -123.06
South: 34.5
North: 34.5
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
      Navigate directly to the URL for data access and direct download.
  • Drazen, J. C., Popp, B. N., Romero, S. (2021) Amino acid compound specific isotope analyses of abyssal deposit feeders, gut contents, and surrounding surface sediments collected on R/V Atlantis cruise AT42-10 and R/V Western Flyer Pulse 72 in the eastern North Pacific in 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-03-30. https://doi.org/10.26008/1912/bco-dmo.840749.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2024-06-27
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Drazen, Jeffrey C.; Popp, Brian N. (2024). Amino acid compound specific isotope analyses of abyssal deposit feeders, gut contents, and surrounding surface sediments collected on R/V Atlantis cruise AT42-10 and R/V Western Flyer Pulse 72 in the eastern North Pacific in 2019 (NCEI Accession 0294397). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0294397. Accessed [date].
Cited Authors
Principal Investigators
Contributors
Resource Providers
Points of Contact
Publishers
Acknowledgments
Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords NODC PLATFORM NAMES THESAURUS BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords ICES/SeaDataNet Ship Codes
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Global Change Master Directory (GCMD) Instrument Keywords Originator Instrument Names
Place keywords NODC SEA AREA NAMES THESAURUS Global Change Master Directory (GCMD) Location Keywords Provider Place Names
Project keywords BCO-DMO Standard Projects Provider Cruise IDs Provider Deployment IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Drazen, Jeffrey C.; Popp, Brian N. (2024). Amino acid compound specific isotope analyses of abyssal deposit feeders, gut contents, and surrounding surface sediments collected on R/V Atlantis cruise AT42-10 and R/V Western Flyer Pulse 72 in the eastern North Pacific in 2019 (NCEI Accession 0294397). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0294397. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees
  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2024-06-27T23:44:52Z - NCEI Accession 0294397 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • CHN Analyzer
  • chromatograph
  • corer
  • mass spectrometer
Platform
  • Doc Ricketts
  • DSV Alvin
  • R/V Atlantis
  • WESTERN FLYER
Last Modified: 2024-06-28T17:27:47Z
For questions about the information on this page, please email: ncei.info@noaa.gov