Dataset Overview | National Centers for Environmental Information (NCEI)

Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017 (NCEI Accession 0291737)

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This dataset contains chemical and physical data collectedat Central California coast, USA from 2017-01-27 to 2017-02-14. These data include dissolved Oxygen, pH, sal_nis, total alkalinity (TA), and water temperature. The instruments used to collect these data include Acoustic Doppler Current Profiler, Oxygen Microelectrode Sensor, YSI Sonde 6-Series, and pH Sensor. These data were collected by Brian Gaylord of University of California-Davis as part of the "Trophic consequences of ocean acidification: Intertidal sea star predators and their grazer prey (BOAR Trophic)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2022-03-15.

The following is the text of the dataset description provided by BCO-DMO:

Effects of mussels on seawater chemistry - vertical profiles

Dataset Description:
Acquisition Description:
These data were generated by establishing a mussel bed in a laboratory flow tunnel. Each profile represents a period where chemistry (pH and O2) was measured at defined heights within and above the mussel bed. These profiles occurred at two places in the mussel bed. Alkalinity at the top of each profile was determined with bottle samples and interpolated to each time point. Alkalinity profiles were generated by calculating the change in alkalinity using the pH and O2 profiles. These chemical profiles were used to calculate calcification and respiration rates of the mussel bed.

Known Issues: No oxygen data was collected for profiles 1-7. This also prohibits the calculation of alkalinity profiles.

Methods described in detail in Ninokawa et al. (2020).

Dataset Citation

Cite as: Gaylord, Brian (2024). Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017 (NCEI Accession 0291737). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291737. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0291737

Full Text · XML

Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	TSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Coverage Description	Central California coast, USA
Time Period	2017-01-27 to 2017-02-14
Spatial Bounding Box Coordinates	West: East: South: North:
Spatial Coverage Map

General Documentation

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Descriptive Information
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Associated Resources

Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Ninokawa, A. T., Gaylord, B. (2022) Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-02-23. https://doi.org/10.26008/1912/bco-dmo.866304.1
- https://doi.org/10.26008/1912/bco-dmo.866304.1 (download)
  originator dataset

gov.noaa.nodc:BCO-DMO

Publication Dates	publication: 2024-04-23
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Purpose	This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Gaylord, Brian (2024). Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017 (NCEI Accession 0291737). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291737. Accessed [date].
Cited Authors	Gaylord, Brian University of California-Davis
Principal Investigators	Brian Gaylord University of California - Davis; Bodega Marine Laboratory (BML)
Contributors	University of California - Davis
Resource Providers	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Points of Contact	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1636191 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1636191

Theme keywords	NODC DATA TYPES THESAURUS DISSOLVED OXYGEN pH SALINITY total alkalinity WATER TEMPERATURE NODC OBSERVATION TYPES THESAURUS chemical physical WMO_CategoryCode oceanography BCO-DMO Standard Parameters ISO_DateTime_Local ISO_DateTime_UTC cast dissolved Oxygen height no standard parameter pH sal_nis total alkalinity (TA) water temperature Global Change Master Directory (GCMD) Science Keywords EARTH SCIENCE > OCEANS > OCEAN CHEMISTRY > ALKALINITY EARTH SCIENCE > OCEANS > OCEAN CHEMISTRY > OXYGEN EARTH SCIENCE > OCEANS > OCEAN CHEMISTRY > PH EARTH SCIENCE > OCEANS > OCEAN TEMPERATURE > WATER TEMPERATURE EARTH SCIENCE > OCEANS > SALINITY/DENSITY > SALINITY Originator Parameter Names ISO_DateTime_Local ISO_DateTime_UTC del_TA diff_o2 diff_ph o2_height o2_position ph_height ph_position prof_TA prof_o2 prof_ph prof_temp profile salinity top_TA top_o2 top_ph top_temp
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS University of California - Davis NODC SUBMITTING INSTITUTION NAMES THESAURUS Biological and Chemical Oceanography Data Management Office Global Change Master Directory (GCMD) Data Center Keywords BCO-DMO > Biological and Chemical Oceanography Data Management Office
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS ADCP oxygen sensor pH sensor BCO-DMO Standard Instruments Acoustic Doppler Current Profiler Oxygen Microelectrode Sensor YSI Sonde 6-Series pH Sensor Global Change Master Directory (GCMD) Instrument Keywords ADCP > Acoustic Doppler Current Profiler OXYGEN METERS > OXYGEN METERS PH METERS > PH METERS Originator Instrument Names Honeywell Durafet III combination electrode Nortek acoustic doppler profiler Presens Microx 4 Profiling O2 and temperature sensor Yellow Springs Instruments 6920 Multiparameter Sonde.
Project keywords	BCO-DMO Standard Projects Trophic consequences of ocean acidification: Intertidal sea star predators and their grazer prey (BOAR Trophic) Provider Funding Award Information Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1636191
Keywords	NCEI ACCESSION NUMBER 0291737

Use Constraints	Cite as: Gaylord, Brian (2024). Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017 (NCEI Accession 0291737). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291737. Accessed [date].
Data License	This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License. SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2024-04-23T14:17:51Z - NCEI Accession 0291737 v1.1 was published.
Output Datasets	NCEI Accession 0291737 v1.1 NCEI Accession 0291737 v1.1 (download) published 2024-04-23T14:17:51Z

Acquisition Information (collection)
Instrument	ADCP oxygen sensor pH sensor

Last Modified: 2024-06-26T19:24:12Z
For questions about the information on this page, please email: ncei.info@noaa.gov

Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017 (NCEI Accession 0291737)

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