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Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017 (NCEI Accession 0291595)

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This dataset contains data collected from 2017-05-20 to 2017-05-27. These data include depth. The instruments used to collect these data include Fluorometer. These data were collected by Mónica Medina and Roberto Iglesias-Prieto of Pennsylvania State University as part of the "RAPID: Coral robustness: lessons from an "improbable" reef (Varadero Reef)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2020-03-04.

The following is the text of the dataset description provided by BCO-DMO:

PSII coral transplants

Dataset Description:
These are primary data of the PSII photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) in a reciprocal transplant experiment and on random colonies. The data reported here were obtained from coral fragments used in a transplant experiment.

The Varadero Reef is located south-west of the Cartagena Bay close to the southern strait that connects the Bay to the Caribbean Sea in Colombia (10°18’23.3”N, 75°35’08.0”W). The Bay is a receiving estuary from the Magdalena River through the Canal del Dique, a man-made channel whose construction and operation dates back almost a century. Three study sites with contrasting light regimes were considered in order to evaluate the role of the light-environment perturbation associated with the Dique channel freshwater plume on the photosynthetic performance of corals from Varadero: 1) Varadero reef at 3.5m depth close to the Dique channel mouth (10°18’23.3”N, 75°35’08.0”W), 2) Rosario reef at 12m depth as clear-control site 21 km southwest from Varadero (10°11'12.1"N, 75°44'43.0"W), and 3) Cartagena Bay at 3m depth, the closest site to the Dique channel mouth and most turbid among the three sites (10°18'5.80"N, 75°34'37.10"W).

These data were used in the manuscript “Degradation of the underwater light environment: physiological and ecological consequences for reef corals” submitted to the Journal Nature Communications Biology. [under review. 2019-12-28]
  • Cite as: Medina, Mónica; Iglesias-Prieto, Roberto (2024). Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017 (NCEI Accession 0291595). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291595. Accessed [date].
gov.noaa.nodc:0291595
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Distributor NOAA National Centers for Environmental Information
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Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 2017-05-20 to 2017-05-27
Spatial Bounding Box Coordinates
West: -75.7453
East: -75.577
South: 10.1867
North: 10.3065
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
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  • Medina, M., Iglesias-Prieto, R. (2020) Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2020-01-08. https://doi.org/10.1575/1912/bco-dmo.786485.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2024-04-21
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
The Photosystem II (PSII) photochemical efficiency (Yield PSII) was recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata.

Measurements were recorded on corals used in a reciprocal transplant experiment and on random colonies. Data from three study sites are reported: Varadero at 3.5m depth (10°18’23.3”N, 75°35’08.0”W); Rosario at 12m depth (10°11'12.1"N, 75°44'43.0"W); and Cartagena Bay at 3m depth (10°18'5.80"N, 75°34'37.10"W). Varadero and Rosario were both source and destination sites; Cartagena Bay was only a destination site.

The maximum quantum yield of PSII (Fv/Fm) was recorded at dusk and the effective quantum yield of PSII (ΔF/Fm’) at local noon during peak of sunlight exposure. Measurements were performed with a submergible Pulse Amplitud Modulated fluorometer (diving-PAM, Walz, Germany) on fragments used in a reciprocal transplant experiment and on colonies randomly distributed at similar depths compared to the transplant experiment. Three study sites with contrasting exposure to the Dique channel freshwater plume were considered: 1) Varadero reef at 3.5m depth close to the Dique channel mouth (10°18’23.3”N, 75°35’08.0”W), 2) Rosario reef at 12m depth as clear-control site located 21 km southwest of Varadero (10°11'12.1"N, 75°44'43.0"W), and 3) Cartagena Bay at 3m depth, the closest site to the Dique channel mouth (10°18'5.80"N, 75°34'37.10"W).

The software WinControl-3 was used to operate and download the data from the diving-PAM.
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
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  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Medina, Mónica; Iglesias-Prieto, Roberto (2024). Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017 (NCEI Accession 0291595). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291595. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Global Change Master Directory (GCMD) Instrument Keywords Originator Instrument Names
Project keywords BCO-DMO Standard Projects Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Medina, Mónica; Iglesias-Prieto, Roberto (2024). Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017 (NCEI Accession 0291595). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291595. Accessed [date].
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  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
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Processing Steps
  • 2024-04-21T18:43:11Z - NCEI Accession 0291595 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • fluorometer
Last Modified: 2024-05-31T15:14:38Z
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