Dataset Overview | National Centers for Environmental Information (NCEI)

Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020 (NCEI Accession 0291546)

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This dataset contains data collected in the South Atlantic Ocean and Southern Ocean from 2020-02-08 to 2020-03-07. These data include depth. The instruments used to collect these data include Imaging FlowCytobot. These data were collected by Josh Kohut of State University of New Jersey and Matthew Oliver of University of Delaware as part of the "Collaborative Research: Physical Mechanisms Driving Food Web Focusing in Antarctic Biological Hotspots (Project SWARM)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2022-09-19.

The following is the text of the dataset description provided by BCO-DMO:

Image Flow CytoBot Image Data

Dataset Description:
Acquisition Description:
The IFCB sampling occurred on February 8 and March 7 2020 at three stations over Palmer Deep Canyon (see Hudson et al., 2021 for station locations). Water samples for the IFCB were collected with a SeaBird SBE-19 Plus V2 CTD and 6 Niskin bottles, which fired at 5, 35, 75, 100, 150, and 200 m on the upcasts.

Dataset Citation

Cite as: Oliver, Matthew; Kohut, Joshua (2024). Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020 (NCEI Accession 0291546). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291546. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0291546

Full Text · XML

Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	TSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2020-02-08 to 2020-03-07
Spatial Bounding Box Coordinates	West: -64.272 East: -64.112 South: -64.932 North: -64.842
Spatial Coverage Map

General Documentation

NCEI Dataset Landing Page
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Descriptive Information
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Associated Resources

Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Oliver, M., Kohut, J., Hudson, K. (2021) Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-12-07. https://doi.org/10.26008/1912/bco-dmo.865002.1
- https://doi.org/10.26008/1912/bco-dmo.865002.1 (download)
  originator dataset

gov.noaa.nodc:BCO-DMO

Publication Dates	publication: 2024-04-21
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Purpose	This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Oliver, Matthew; Kohut, Joshua (2024). Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020 (NCEI Accession 0291546). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291546. Accessed [date].
Cited Authors	Oliver, Matthew University of Delaware Kohut, Joshua State University of New Jersey
Principal Investigators	Matthew Oliver University of Delaware Joshua Kohut Rutgers, The State University of New Jersey
Contributors	University of Delaware Rutgers, The State University of New Jersey
Resource Providers	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Points of Contact	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745009 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1745009 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1744884 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1744884 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745011 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1745011 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745018 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1745018 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745023 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1745023 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745081 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1745081

Theme keywords	NODC DATA TYPES THESAURUS DEPTH - OBSERVATION WMO_CategoryCode oceanography BCO-DMO Standard Parameters Pixel size in X direction Pixel size in the Y direction biovolume date depth diameter file_name image_analysis incubation time or duration latitude length longitude station time_elapsed Originator Parameter Names ADC_time Area Area_over_Perimeter Area_over_PerimeterSquared Biovolume BoundingBox_xwidth BoundingBox_ywidth ConvexArea ConvexPerimeter Eccentricity EquivDiameter Extent FeretDiameter H180 H90 H90_over_H180 H90_over_Hflip HOG01 HOG02 HOG03 HOG04 HOG05 HOG06 HOG07 HOG08 HOG09 HOG10 HOG11 HOG12 HOG13 HOG14 HOG15 HOG16 HOG17 HOG18 HOG19 HOG20 HOG21 HOG22 HOG23 HOG24 HOG25 HOG26 HOG27 HOG28 HOG29 HOG30 HOG31 HOG32 HOG33 HOG34 HOG35 HOG36 HOG37 HOG38 HOG39 HOG40 HOG41 HOG42 HOG43 HOG44 HOG45 HOG46 HOG47 HOG48 HOG49 HOG50 HOG51 HOG52 HOG53 HOG54 HOG55 HOG56 HOG57 HOG58 HOG59 HOG60 HOG61 HOG62 HOG63 HOG64 HOG65 HOG66 HOG67 HOG68 HOG69 HOG70 HOG71 HOG72 HOG73 HOG74 HOG75 HOG76 HOG77 HOG78 HOG79 HOG80 HOG81 Hflip Hflip_over_H180 MajorAxisLength MinorAxisLength Orientation PMTA PMTB PMTC PMTD Perimeter ROIheight ROIwidth ROIx ROIy RWcenter2total_powerratio RWhalfpowerintegral Ring01 Ring02 Ring03 Ring04 Ring05 Ring06 Ring07 Ring08 Ring09 Ring10 Ring11 Ring12 Ring13 Ring14 Ring15 Ring16 Ring17 Ring18 Ring19 Ring20 Ring21 Ring22 Ring23 Ring24 Ring25 Ring26 Ring27 Ring28 Ring29 Ring30 Ring31 Ring32 Ring33 Ring34 Ring35 Ring36 Ring37 Ring38 Ring39 Ring40 Ring41 Ring42 Ring43 Ring44 Ring45 Ring46 Ring47 Ring48 Ring49 Ring50 RotatedArea RotatedBoundingBox_xwidth RotatedBoundingBox_ywidth STartPoint SignalLength Solidity Wedge01 Wedge02 Wedge03 Wedge04 Wedge05 Wedge06 Wedge07 Wedge08 Wedge09 Wedge10 Wedge11 Wedge12 Wedge13 Wedge14 Wedge15 Wedge16 Wedge17 Wedge18 Wedge19 Wedge20 Wedge21 Wedge22 Wedge23 Wedge24 Wedge25 Wedge26 Wedge27 Wedge28 Wedge29 Wedge30 Wedge31 Wedge32 Wedge33 Wedge34 Wedge35 Wedge36 Wedge37 Wedge38 Wedge39 Wedge40 Wedge41 Wedge42 Wedge43 Wedge44 Wedge45 Wedge46 Wedge47 Wedge48 comparator_out date depth file_ID grabtimeend grabtimestart id_tag inhibitTime latitude longitude moment_invariant1 moment_invariant2 moment_invariant3 moment_invariant4 moment_invariant5 moment_invariant6 moment_invariant7 numBlobs peakA peakB peakC peakD pmt_ratio roi_number rotated_BoundingBox_solidity runTime shapehist_kurtosis_normEqD shapehist_mean_normEqD shapehist_median_normEqD shapehist_mode_normEqD shapehist_skewness_normEqD start_byte station status summedArea summedBiovolume summedConvexArea summedConvexPerimeter summedConvexPerimeter_over_Perimeter summedFeretDiameter summedMajorAxisLength summedMinorAxisLength summedPerimeter texture_average_contrast texture_average_gray_level texture_entropy texture_smoothness texture_third_moment texture_uniformity time_of_flight
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS Rutgers, The State University of New Jersey University of Delaware NODC SUBMITTING INSTITUTION NAMES THESAURUS Biological and Chemical Oceanography Data Management Office Global Change Master Directory (GCMD) Data Center Keywords BCO-DMO > Biological and Chemical Oceanography Data Management Office
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS cytometer-submersible flow BCO-DMO Standard Instruments Imaging FlowCytobot Global Change Master Directory (GCMD) Instrument Keywords FLOW CYTOMETRY Originator Instrument Names Imaging Flow CytoBot (IFCB)
Place keywords	NODC SEA AREA NAMES THESAURUS South Atlantic Ocean Southern Ocean Global Change Master Directory (GCMD) Location Keywords OCEAN > ATLANTIC OCEAN > SOUTH ATLANTIC OCEAN OCEAN > SOUTHERN OCEAN
Project keywords	BCO-DMO Standard Projects Collaborative Research: Physical Mechanisms Driving Food Web Focusing in Antarctic Biological Hotspots (Project SWARM) Provider Funding Award Information Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1744884 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745009 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745011 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745018 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745023 Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-1745081
Keywords	NCEI ACCESSION NUMBER 0291546

Use Constraints	Cite as: Oliver, Matthew; Kohut, Joshua (2024). Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020 (NCEI Accession 0291546). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291546. Accessed [date].
Data License	This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License. SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2024-04-21T15:29:50Z - NCEI Accession 0291546 v1.1 was published.
Output Datasets	NCEI Accession 0291546 v1.1 NCEI Accession 0291546 v1.1 (download) published 2024-04-21T15:29:50Z

Acquisition Information (collection)
Instrument	cytometer-submersible flow

Last Modified: 2024-05-31T15:15:28Z
For questions about the information on this page, please email: ncei.info@noaa.gov

Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020 (NCEI Accession 0291546)

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