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Dataset Overview | National Centers for Environmental Information (NCEI)

Genetic sequence identifiers for Etelis samples collected in the Indo-Pacific Ocean between 1997 and 2012 (NCEI Accession 0291499)

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This dataset contains biological and survey - biological data collected from 1997-01-01 to 2012-01-01. These data include species. These data were collected by Brian Bowen and Kimberly R. Andrews of University of Hawaii as part of the "Origins of Hawaiian Reef Fishes (Hawaiian Fish Origins)" project and "Indo-Pac Research Coordination Network (Indo-Pac RCN)" program. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2022-05-10.

The following is the text of the dataset description provided by BCO-DMO:

Acquisition Description:
The holotype was purchased at Yanbu fish market after being collected by hook and line in a nearby area and was deposited at the National Museum of Marine Biology & Aquarium (NMMB-P). Fifteen paratypes were obtained from Western Australia and deposited at the fish collection of California Academy of Sciences, San Francisco (CAS). These paratypes were part of a previous study using morphological and genetic data which revealed that two morphologically similar species were being identified as E. carbunculus , leading the authors to propose an undescribed species of Etelis (Andrews et al. 2016). That study generated DNA sequence data from cytochrome b (cyt b ) for the paratypes, and the sequences have been deposited in GenBank (Accession numbers MW151867- MW151881). See "Related Datasets" for links to the NCBI Popsets that contain these sequences.

[See Related Dataset "Etelis morphoglogy" https://www.bco-dmo.org/dataset/873174 for m orphological measurements, meristics for the Etelis samples. The column "Field_ID" can be used to relate the Etelis genetics and Etelis morphology datasets. ]

DNA sequences from cyt b and cytochrome oxidase I (COI) were obtained from the E. boweni holotype and four E. radiosus specimens from the Yanbu fish market using previously described protocols (Andrews et al. 2016). The sequences were aligned with sequences used in phylogenetic analyses in Andrews et al. 2016, including cyt b and COI sequences from six E. boweni and six E. carbunculus specimens collected across the Indo-Pacific, along with sequences from all other recognized Etelis species (six E. coruscans specimens, seven E. radiosus specimens, five E. oculatus specimens), and one specimen from each of two outgroups ( Pristipomoides filamentosus and Aphareus rutilans ). All sequences were then trimmed to a common length for each locus, for a total of 375 bp for cyt b and 599 bp for COI.

Location: Indo-Pacific

Species List:

ScientificName,AphiaID,LSID

Aphareus rutilans,218468,urn:lsid:marinespecies.org:taxname:218468

Etelis boweni,1536489,urn:lsid:marinespecies.org:taxname:1536489

Etelis carbunculus,212545,urn:lsid:marinespecies.org:taxname:212545

Etelis coruscans,212544,urn:lsid:marinespecies.org:taxname:212544

Etelis oculatus,159789,urn:lsid:marinespecies.org:taxname:159789

Etelis radiosus,276518,urn:lsid:marinespecies.org:taxname:276518

Pristipomoides filamentosus,218511,urn:lsid:marinespecies.org:taxname:218511
  • Cite as: Bowen, Brian; Andrews, Kimberly R. (2024). Genetic sequence identifiers for Etelis samples collected in the Indo-Pacific Ocean between 1997 and 2012 (NCEI Accession 0291499). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291499. Accessed [date].
gov.noaa.nodc:0291499
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Distributor NOAA National Centers for Environmental Information
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Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 1997-01-01 to 2012-01-01
Spatial Bounding Box Coordinates
West: 29.8892
East: -120.1551564
South: -35
North: 32
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
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  • Bowen, B., Andrews, K. R. (2022) Genetic sequence identifiers for Etelis samples collected in the Indo-Pacific Ocean between 1997 and 2012. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-04-21. https://doi.org/10.26008/1912/bco-dmo.873427.1
    • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2024-04-21
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
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  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Bowen, Brian; Andrews, Kimberly R. (2024). Genetic sequence identifiers for Etelis samples collected in the Indo-Pacific Ocean between 1997 and 2012 (NCEI Accession 0291499). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291499. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Project keywords BCO-DMO Standard Programs BCO-DMO Standard Projects Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Bowen, Brian; Andrews, Kimberly R. (2024). Genetic sequence identifiers for Etelis samples collected in the Indo-Pacific Ocean between 1997 and 2012 (NCEI Accession 0291499). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291499. Accessed [date].
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  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
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Processing Steps
  • 2024-04-21T06:01:49Z - NCEI Accession 0291499 v1.1 was published.
Output Datasets
Last Modified: 2024-05-31T18:50:46Z
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