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Dataset Overview | National Centers for Environmental Information (NCEI)

Organism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019 (NCEI Accession 0291489)

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This dataset contains biological data collected in the Gulf of Mexico from 2016-07-01 to 2016-08-31. These data include taxon_code. The instruments used to collect these data include CTD Sea-Bird SBE SEACAT 19plus and Water Quality Multiprobe. These data were collected by David L. Kimbro of Northeastern University, J Wilson White of Oregon State University, and Christopher D. Stallings of University of South Florida as part of the "Collaborative Research: RAPID: Quantifying mechanisms by which Hurricane Michael facilitates a stable-state reversal on oyster reefs (Oyster Reef Reversal)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2020-10-05.

The following is the text of the dataset description provided by BCO-DMO:

Survey counts and sizes

Dataset Description:
Organism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019. Reported are counts, sizes (mm) and relative density.
  • Cite as: Kimbro, David L.; Stallings, Christopher D.; White, J. Wilson (2024). Organism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019 (NCEI Accession 0291489). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291489. Accessed [date].
gov.noaa.nodc:0291489
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  • TSV
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Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 2016-07-01 to 2016-08-31
Spatial Bounding Box Coordinates
West: -85.183
East: -84.339
South: 29.645
North: 29.967
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
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  • Kimbro, D. L., White, J., Stallings, C. D. (2020) Organism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-07-29. https://doi.org/10.26008/1912/bco-dmo.821081.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2024-04-21
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
Site Selection- From Hanley et. al 2019, this was a multi-step process that first involved using ArcGIS to partition the bay’s oyster reefs (commercial and non-commercial) into six zones. Zone assignment was based on the reef’s relative distance by water from the river input (near, mid, far) as well as a reef’s east-west orientation to the river (East Apalachicola and West Apalachicola). Next, we randomly selected three reefs out of all possible reefs (including the experimental reefs) within each zone.

Surveys- Methods for surveys done from 2013-2016 were taken from Hanley et al. 2019.

Surveys 2013-2016-On each reef subtidal reef, we obtained spatially balanced samples by extending four 20 m transects at 90 degree angles from the boat. Along each transect, we overlaid a 0.25 m2 weighted quadrat at the 5, 10, 15, and 20 m marks. For each quadrat, we collected the entire contents of the quadrat into a uniquely labeled mesh bag, transported the bag to the surface, and placed the bag on ice to be processed at the lab. For intertidal reefs, we sampled 2 quadrats per reef, ‘low’ (located at the low water level) and ‘high’ (2 m above the low transect) quadrats centered along a 20 m transect on each reef.

Surveys 2019- Sites were selected from previously sampled reefs. Subtidal surveys were conducted by divers on SCUBA. A buoy was dropped at the sites. The divers attached a 10m transect to the buoy and surveyed the area in the four cardinal directions (North, South, East and West). We characterized the substrate 0.5m on each side of the transect as mud, sand or shell hash, as well as quantified the amount of oyster shells and counted the number of Oyster Drills (Stramonita haemastoma). If there were oysters or shells at meter 5 or meter 10 along the transect then everything in a 0.25m2 quadrat was collected and processed at the lab. We only sampled the intertidal sites in December 2019. We laid a transect across the crest of the reef and then divided the length of the transect by 7 to get a consistent sampling interval. At each sampling interval we recorded the width of the sampling side and then placed a 0.0625m2 quadrat at the midpoint of the sampling width and collected all the contents to be brought back to the lab and processed.
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Kimbro, David L.; Stallings, Christopher D.; White, J. Wilson (2024). Organism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019 (NCEI Accession 0291489). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291489. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Global Change Master Directory (GCMD) Instrument Keywords Originator Instrument Names
Place keywords NODC SEA AREA NAMES THESAURUS Global Change Master Directory (GCMD) Location Keywords
Project keywords BCO-DMO Standard Projects Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Kimbro, David L.; Stallings, Christopher D.; White, J. Wilson (2024). Organism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019 (NCEI Accession 0291489). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291489. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2024-04-21T05:22:18Z - NCEI Accession 0291489 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • CTD
  • multi-parameter water quality sensor
Last Modified: 2024-05-31T15:15:28Z
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