Dataset Overview | National Centers for Environmental Information (NCEI)

Time-at-depth data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009 (NCEI Accession 0291420)

Graphic not available.

This dataset contains data collected on Chartered Vessel, R/V BIP XII, R/V Pacific Storm, and R/V R4107 during cruises Gilly_Squid_CCS1, Gilly_Squid_GOC1, Gilly_Squid_GOC2, and Gilly_Squid_GOC3 from 2008-10-12 to 2008-11-28. These data include depth. The instruments used to collect these data include Wildlife Computers Mk10 Pop-up Archival Tag (PAT). These data were collected by William Gilly of Stanford University as part of the "Hypoxia and the ecology, behavior and physiology of jumbo squid, Dosidicus gigas (Jumbo Squid Physiology)" and "Physiological limits to vertical migrations of the pelagic, jumbo squid, Dosidicus gigas in the Gulf of California (Jumbo Squid Vertical Migration)" projects. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2019-11-14.

The following is the text of the dataset description provided by BCO-DMO:

Time-at-depth data (to generate histograms) from tagged jumbo squid.

Dataset Description:
Humboldt squid ( Dosidicus gigas ) were tagged from 2004-2009 in the California Current System (CCS) and Gulf of California (GOC). Data include the amount of time spent per depth bin from each tagged squid. Daily histograms can be produced by adding up the counts per day for each depth bin. Each count in the count_night and count_day columns represents 75 seconds of time.

Dataset Citation

Cite as: Gilly, William (2024). Time-at-depth data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009 (NCEI Accession 0291420). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291420. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0291420

Full Text · XML

Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	TSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2008-10-12 to 2008-11-28
Spatial Bounding Box Coordinates	West: -123.48 East: -111.22 South: 27.34 North: 37.91
Spatial Coverage Map

General Documentation

NCEI Dataset Landing Page
Navigate directly to the URL for a descriptive web page with download links.
Descriptive Information
Navigate directly to the URL for a descriptive web page with download links.

Associated Resources

Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Gilly, W. (2013) Time-at-depth data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2013-11-22. https://doi.org/10.1575/1912/bco-dmo.471977.1
- https://doi.org/10.1575/1912/bco-dmo.471977.1 (download)
  originator dataset

gov.noaa.nodc:BCO-DMO

Publication Dates	publication: 2024-04-20
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Supplemental Information	Acquisition Description: All data were collected with Mk10-PAT tags (Wildlife Computers, Redmond, WA) attached to living Humboldt squid ( Dosidicus gigas ) as described elsewhere (Gilly et al. 2006). Tags were programmed to sample at 0.5 Hz or 1 Hz. Tags deployed in Monterey Bay (CCS-1through CCS-6; deployed during OCE-0850839) were programmed to transmit time series data (75 s intervals = 0.01333 Hz) for depth, temperature and light to the Argos satellite system. Tags deployed in the Gulf of California (GOC-1 through GOC-6; deployed during OCE-0526640) were physically recovered, and the data were subsampled to match the 75 s interval of the CCS tags. This procedure was also carried out for tag CCS-6 that was recovered but never reported to Argos. Mk10 PAT tags measure depth from 0 to 2000 m with a resolution of 0.5 m and temperature from 0 to +40 degrees C with a resolution of 0.05 degree C. The tags were used as supplied by the manufacturer without additional calibration. References: Gilly, W.F., Zeidberg, L.D., Booth, J.A.T, Stewart, J.S., Marshall, G., Abernathy, K., and Bell, L.E. 2012. Locomotion and behavior of Humboldt squid, Dosidicus gigas , in relation to natural hypoxia in the Gulf of California, Mexico. The Journal of Experimental Biology, 215, 3175-3190. https://doi.org/10.1242/jeb.072538 . Gilly, W.F., Markaida, U., Baxter, C.H., Block, B.A., Boustany, A., Zeidberg, L., Reisenbichler, K., Robinson, B., Bazzino, G., and Salinas, C. 2006. Vertical and horizontal migrations by the jumbo squid Dosidicus gigas revealed by electronic tagging. Marine Ecology Press Series, 324, 1-17. https://doi.org/10.3354/meps324001 . Stewart, J.S., Field, J.C., Markaida, U., and Gilly, W.F. 2013. Behavioral ecology of jumbo squid ( Dosidicus gigas ) in relation to oxygen minimum zones. Deep Sea Research Part II: Topical Studies in Oceanography, 95, 197-208. https://doi.org/10.1016/j.dsr2.2012.06.005 .
Purpose	This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Gilly, William (2024). Time-at-depth data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009 (NCEI Accession 0291420). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291420. Accessed [date].
Cited Authors	Gilly, William Stanford University
Principal Investigators	William Gilly Stanford University
Contributors	Stanford University
Resource Providers	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Points of Contact	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0850839 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=0850839 Funding provided by California Sea Grant (CASG) Award Number: R/OPCFISH-06 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0526640 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=0526640

Theme keywords	NODC DATA TYPES THESAURUS DEPTH - OBSERVATION WMO_CategoryCode oceanography BCO-DMO Standard Parameters brief description date begin date end depth depth_max latitude at end time of measurement latitude at start time of measurement length longitude at end time of measurement longitude at start time of measurement no standard parameter tagid time_elapsed Originator Parameter Names count_day count_night date_end date_start deploy_day depth_m descrip dorsal_mantle_len lat_end lat_start lon_end lon_start max_depth recovered sampling_time squid_id tag_id
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS Stanford University NODC SUBMITTING INSTITUTION NAMES THESAURUS Biological and Chemical Oceanography Data Management Office Global Change Master Directory (GCMD) Data Center Keywords BCO-DMO > Biological and Chemical Oceanography Data Management Office
Platform keywords	NODC PLATFORM NAMES THESAURUS CHARTERED VESSEL R/V Pacific Storm BCO-DMO Platform Names Chartered Vessel R/V BIP XII R/V Pacific Storm R/V R4107 Global Change Master Directory (GCMD) Platform Keywords Ships ICES/SeaDataNet Ship Codes PACIFIC STORM (call sign: WDC6641, ICES code: 33JV, 2001)
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS marine animal recording tag BCO-DMO Standard Instruments Wildlife Computers Mk10 Pop-up Archival Tag (PAT) Originator Instrument Names MK10 PAT
Place keywords	Provider Place Names California Current System and Gulf of California Gulf of California Monterey Bay vicinity
Project keywords	BCO-DMO Standard Projects Hypoxia and the ecology, behavior and physiology of jumbo squid, Dosidicus gigas (Jumbo Squid Physiology) Physiological limits to vertical migrations of the pelagic, jumbo squid, Dosidicus gigas in the Gulf of California (Jumbo Squid Vertical Migration) Provider Cruise IDs Gilly_Squid_CCS1 Gilly_Squid_GOC1 Gilly_Squid_GOC2 Gilly_Squid_GOC3 Provider Funding Award Information Funding provided by California Sea Grant (CASG) Award Number: R/OPCFISH-06 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0526640 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0850839
Keywords	NCEI ACCESSION NUMBER 0291420

Use Constraints	Cite as: Gilly, William (2024). Time-at-depth data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009 (NCEI Accession 0291420). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291420. Accessed [date].
Data License	This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License. SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2024-04-20T19:27:32Z - NCEI Accession 0291420 v1.1 was published.
Output Datasets	NCEI Accession 0291420 v1.1 NCEI Accession 0291420 v1.1 (download) published 2024-04-20T19:27:32Z

Acquisition Information (collection)
Instrument	marine animal recording tag
Platform	CHARTERED VESSEL R/V Pacific Storm

Last Modified: 2024-05-31T18:50:46Z
For questions about the information on this page, please email: ncei.info@noaa.gov

Time-at-depth data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009 (NCEI Accession 0291420)

Follow us

Contact us