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Table 1: Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated from 2014-01-01 to 2014-12-31 (NCEI Accession 0291315)

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This dataset contains chemical and physical data collected from 2014-01-01 to 2014-12-31. These data include Aragonite Saturation State, pH, salinity calculated from CTD primary sensors, total alkalinity, water pressure, and water temperature. The instruments used to collect these data include Benchtop pH Meter, Elemental Analyzer, and unknown. These data were collected by Rinat Gabitov of Mississippi State University, Karyn Rogers of Rensselaer Polytechnic Institute, and Chiara Borrelli of University of Rochester as part of the "Biologically induced methane oxidation and precipitation of carbonate minerals: An experimental study (Deep Sea Geochem CaCO3)" project and "Center for Dark Energy Biosphere Investigations (C-DEBI)" program. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2020-04-09.

The following is the text of the dataset description provided by BCO-DMO:

Table 1: Carbonate chemistry

Dataset Description:
Table 1: Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated
  • Cite as: Gabitov, Rinat; Borrelli, Chiara; Rogers, Karyn (2024). Table 1: Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated from 2014-01-01 to 2014-12-31 (NCEI Accession 0291315). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291315. Accessed [date].
gov.noaa.nodc:0291315
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Dataset Point of Contact NOAA National Centers for Environmental Information
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Time Period 2014-01-01 to 2014-12-31
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East:
South:
North:
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General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
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  • Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2020-03-25. https://doi.org/10.26008/1912/bco-dmo.806920.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2024-04-19
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
Crystallization experiment
In order to simulate the high-pressure conditions at the seafloor, three laboratory experiments involving aragonite precipitation were conducted. Two experiments were conducted using a high-pressure apparatus (Figure 1). The control experiment was performed at atmospheric pressure and 8°C in a container immersed in a constant temperature bath. The experimental fluid (growth medium) was prepared by mixing artificial seawater (ASW) and small aliquots of Na2CO3. The addition of Na2CO3 allowed the saturation state of the fluid with respect to aragonite to be increased, in order to promote nucleation and crystallization on carbonate minerals. Artificial seawater was prepared by dissolving 32 g of Instant Ocean salt (Instant Ocean Spectrum Brands) mix in 1 kg of distilled water and filtering it through a 0.2 µm Nalgene filter. A small amount of 0.1M Na2CO3 was then introduced into the continuously stirred artificial seawater using a syringe pump set at a rate of ~1 ml/min, to reach a final volume ratio of Na2CO3 to artificial seawater of ~1:13. During the addition of Na2CO3, the solution was in contact with the atmosphere. This procedure homogenized the fluid and also precluded aragonite nucleation prior to the beginning of the experiment. The absence of crystal nucleation was confirmed visually by monitoring the solution pH, which remained stable for the 1-2 hours needed for the experiment setup. The observation that aragonite crystallization did not start prior to the beginning of the experiment is consistent with previously published data, which show that 6 hours elapsed before onset of crystallization in the solution similar to the one we used (7.4 mmol of Na2CO3 :1 liter of seawater) (Pytkowicz, 1965).

Petrographic glass slides frosted with silicon carbide (SiC) abrasive paper were used to promote aragonite crystallization along scratches. For each experiment, one slide was placed into the high-pressure vessel prior to the transfer of the experimental fluid. The experimental fluid was then placed into the vessel after it was precooled to 8°C. After that, the air space above the solution (<200 cm3) was purged with nitrogen three times before the pressure was increased to a desired value (110 or 345 bars). The experimental fluid was sampled daily using a valve on the pressure vessel (Figure 1) and pH was measured to estimate time of nucleation and crystallization of CaCO3. For pH measurements, electrode calibration and measurements were conducted at temperatures similar to those of the experiment. NBS buffer solutions with pH of 4, 7, and 10 were used for electrode calibration. The pH initially decreased due to carbonate precipitation and reached near-constant values less than 170 hrs from the beginning of the experiments, suggesting that most of the CaCO3 precipitated in the first few days of each experiment. At the end of each run, the experimental products were extracted from the pressure vessel. Crystals (<10 µm in size) were rinsed with distilled water and dried, whereas the experimental fluid was filtered and refrigerated for subsequent elemental analyses. The alkalinity of the final fluid was measured the day after the end of each experiment. Experimental parameters are presented in Table -1.
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Dataset Citation
  • Cite as: Gabitov, Rinat; Borrelli, Chiara; Rogers, Karyn (2024). Table 1: Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated from 2014-01-01 to 2014-12-31 (NCEI Accession 0291315). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291315. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Instrument keywords BCO-DMO Standard Instruments Originator Instrument Names
Project keywords BCO-DMO Standard Programs BCO-DMO Standard Projects Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Gabitov, Rinat; Borrelli, Chiara; Rogers, Karyn (2024). Table 1: Experimental conditions and fluid carbonate chemistry for RPI-3 run where only aragonite precipitated from 2014-01-01 to 2014-12-31 (NCEI Accession 0291315). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0291315. Accessed [date].
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Processing Steps
  • 2024-04-19T17:22:39Z - NCEI Accession 0291315 v1.1 was published.
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Last Modified: 2024-05-31T18:50:46Z
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