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Changes in biovolume in three herbivorous protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days from 2017-04-01 to 2017-06-30 (NCEI Accession 0288337)

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This dataset contains biological and survey - biological data collected from 2017-04-01 to 2017-06-30. These data include species. The instruments used to collect these data include Camera, In-situ incubator, and Microscope - Optical. These data were collected by Gayantonia Franzè and Susanne Menden-Deuer of University of Rhode Island as part of the "Quantifying Temperature Dependence In Growth & Grazing Rates of Planktonic Herbivores (Planktonic Herbivore Temp Dependence)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2021-08-24.

The following is the text of the dataset description provided by BCO-DMO:

Temperature dependent changes in biovolume of three herbivorous protists

Dataset Description:
Acquisition Description:
See complete methodology in Franzè and Menden-Deuer, 2020.

Clonal cultures of Oxyrrhis marina (CCMP 3375), Gyrodinium dominans (SPMC 103), and Protoperidinium bipes were established from single-cell isolation. Herbivorous protists were acclimated to each target temperature before growth rates were measured. Due to the wide temperature range tested (0−22°C), cultures were moved from the initial temperature of 15°C through gradual transitions limited to at most 3°C. The experimental Day 0 (D0) was defined as the first day on which acclimated growth rates were measured. To determine predator and prey abundance, samples were preserved in acid Lugol at a 2% final concentration (Menden-Deuer et al. 2001) and enumerated using a Sedgewick-Rafter slide (1 ml volume) and a Nikon Eclipse E800 light microscope equipped with phase contrast. Herbivore biovolume was calculated based on linear dimensions obtained from ≥35 cells measured at each time point and temperature treatment using an image analysis system consisting of a high-resolution digital camera (Allied Vision, Stingray F45) and ImageJ software (version 1.5i).

Growth rates of the 3 herbivorous species were determined at 7 incubation temperatures: 0, 2, 5, 10, 15, 18, and 22°C. Changes in O. marina, G. dominans, and P. bipes abundance and biomass were determined over 24 h incubations of the triplicate 150 ml bottles and used to calculate growth rates (μ d−1) assuming exponential growth: μ = ln(Nt/N0)/t, where: N0 and Nt are the initial and final cell abundance (or biomass) respectively, and t is the experiment duration in days. Measurements were made at Day 0 and again after 10 and 30 days.
  • Cite as: Menden-Deuer, Susanne; Franzè, Gayantonia (2024). Changes in biovolume in three herbivorous protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days from 2017-04-01 to 2017-06-30 (NCEI Accession 0288337). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0288337. Accessed [date].
gov.noaa.nodc:0288337
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Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
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Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 2017-04-01 to 2017-06-30
Spatial Bounding Box Coordinates
West: -71.422211
East: -71.422211
South: 41.492779
North: 41.492779
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
      Navigate directly to the URL for data access and direct download.
  • Franzè, G., Menden-Deuer, S. (2021) Changes in biovolume in three herbivorous protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-08-05. https://doi.org/10.26008/1912/bco-dmo.857328.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2024-02-02
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Menden-Deuer, Susanne; Franzè, Gayantonia (2024). Changes in biovolume in three herbivorous protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days from 2017-04-01 to 2017-06-30 (NCEI Accession 0288337). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0288337. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Global Change Master Directory (GCMD) Instrument Keywords Originator Instrument Names
Project keywords BCO-DMO Standard Projects Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Menden-Deuer, Susanne; Franzè, Gayantonia (2024). Changes in biovolume in three herbivorous protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days from 2017-04-01 to 2017-06-30 (NCEI Accession 0288337). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0288337. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2024-02-02T16:02:52Z - NCEI Accession 0288337 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • camera
  • microscope
Last Modified: 2024-05-31T15:15:28Z
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