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Dataset Overview | National Centers for Environmental Information (NCEI)

Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments from 1990-01-01 to 2013-12-31 (NCEI Accession 0278826)

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This dataset contains biological and physical data collected on PICRC Small Boats during cruise Palau_reefs_2011-13 in the Philippine Sea from 1990-01-01 to 2013-12-31. These data include density and growth. The instruments used to collect these data include Computerized Tomography (CT) Scanner. These data were collected by Anne L Cohen of Woods Hole Oceanographic Institution as part of the "Constraining Thermal Thresholds and Projections of Temperature Stress on Pacific Coral Reefs Over the 21st Century: Method Refinement and Application (Thermal Thresholds and Projections)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2019-08-02.

The following is the text of the dataset description provided by BCO-DMO:

Annual calcification histories for corals from ten reef sites representing lagoon and barrier reef environments

Dataset Description:
Annual calcification histories for corals from ten reef sites representing lagoon and barrier reef environments.

These data were originally published in figure 5 of:
H.C. Barkley, A.L. Cohen. Skeletal stress markers in Porites corals estimate coral reef community bleaching. Coral Reefs, 35, 1407-1417 (2016). https://doi.org/10.1007/s00338-016-1483-3
  • Cite as: Cohen, Anne L. (2023). Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments from 1990-01-01 to 2013-12-31 (NCEI Accession 0278826). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278826. Accessed [date].
gov.noaa.nodc:0278826
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Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 1990-01-01 to 2013-12-31
Spatial Bounding Box Coordinates
West: 134.22
East: 134.562
South: 7.16
North: 7.822
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
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  • Cohen, A. L. (2017) Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2017-06-29. https://doi.org/10.1575/1912/bco-dmo.707106.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2023-05-27
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
Coral skeletal core collection: We collected 101 skeletal cores from massive Porites coral colonies at ten reef sites representing two major reef environments, barrier reef and lagoon, the latter including fringing reefs around the uplifted karst Rock Islands. The two environments are broadly distinguishable in both physical (flow, temperature, and light regimes) and chemical (carbon system parameters, salinity) characteristics with generally higher flow, light, pH, and salinity and lower SST on the barrier reefs (Shamberger et al. 2014; Barkley et al. 2015).

Skeletal cores (20-40 cm in length) were collected in April 2011, September 2011, April 2012, August 2014, and January 2015 vertically from live coral colonies at 1-6 m depth using pneumatic drills with 3.8 cm diameter diamond drill bits. Core holes were filled with cement plugs hammered flush with the colony surface and sealed with underwater epoxy. Visual inspections of colonies 6-12 months after coring revealed significant overgrowth of plugs and no long-term impacts to the corals. Coral cores were oven-dried and scanned with a Siemens Volume Zoom Helical Computerized Tomography (CT) Scanner at Woods Hole Oceanographic Institution. 3-D CT scans of coral cores were analyzed using OsiriX freeware to visualize the 3-D image (Cantin et al. 2010; Crook et al. 2013) and an automated MATLAB code to quantify skeletal growth parameters and stress banding (DeCarlo et al. 2015).

Coral calcification histories: Annual calcification rates were calculated as the product of annual linear extension and density following the automated procedure described in DeCarlo et al. (2015), which traces density variations along individual corallites identified within the entire 3-D core. Extension rates (upward linear growth) were measured between the successive low-density bands of annual high-low density couplets. Annual density banding was clearly represented in all cores, with low density bands formed at the beginning of each year (c. February) and high-density bands accreted toward the mid-to-late months of the year (c. September). Band identifications were verified using cross-dating, a dendrochronology technique in which shared years of lower growth rates are identified and matched across core records (Fritts 1976; Yamaguchi 1991). Annual skeletal densities were calculated from CT scan intensities converted to calcium carbonate density values using nine coral standards (0.81-1.54 g cm -3 ), where independent measurements of weight and volume for each standard were used to derive a linear relationship between CT scan intensity values (in Hounsfield units) and calcium carbonate density (in g cm -3 ) (DeCarlo et al. 2015).
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Cohen, Anne L. (2023). Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments from 1990-01-01 to 2013-12-31 (NCEI Accession 0278826). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278826. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords
Instrument keywords BCO-DMO Standard Instruments Originator Instrument Names
Place keywords NODC SEA AREA NAMES THESAURUS Global Change Master Directory (GCMD) Location Keywords Provider Place Names
Project keywords BCO-DMO Standard Projects Provider Cruise IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Cohen, Anne L. (2023). Annual calcification histories for corals from ten Palau reef sites representing lagoon and barrier reef environments from 1990-01-01 to 2013-12-31 (NCEI Accession 0278826). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278826. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2023-05-27T05:03:30Z - NCEI Accession 0278826 v1.1 was published.
Output Datasets
Last Modified: 2024-05-31T15:15:28Z
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