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GenBank Accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34-39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) (NCEI Accession 0278733)

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This dataset contains biological data collected on R/V Endeavor during cruise EN447 at Western North Atlantic (34-39N, 68-70W) on 2016-09-23. These data include taxon. These data were collected by Ron J. Etter of University of Massachusetts Boston as part of the "Evolution of Deep Sea Molluscs II (Ev Deep Sea Molluscs II)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2022-05-16.

The following is the text of the dataset description provided by BCO-DMO:

GenBank accession numbers for sequences from deep-sea protobranch bivalves.

Dataset Description:
Sequence data from this research are available on Genbank with metadata (sample location, depth, date, etc.) and accession numbers listed in the publications given below. Details of molecular work are also described in the various publications listed below.

Refer to publications:
Glazier, A.E., and Etter, R.J. 2014. Cryptic speciation along a bathymetric gradient. Biological Journal of the Linnean Society, 113:897-913. https://doi.org/10.1111/bij.12389
Sequences were deposited in GenBank under accession numbers KM102340-KM102448.

Jennings R.M., and Etter, R.J. 2014. Phylogeographic estimates of colonization of the deep Atlantic by the protobranch bivalve Nucula atacellana. Polish Polar Research, 35: 261-278. Invited Paper. https://doi.org/10.2478/popore-2014-0017
New sequences generated in this work were deposited in GenBank under Accessions KJ950184–KJ950282 (Table 1).

Boyle, E.E. and Etter, R.J. 2013. Heteroplasmy in a deep-sea protobranch bivalve suggests an ancient origin of doubly uniparental inheritance of mitochondria in Bivalvia. Marine Biology, 160:413-422. https://doi.org/10.1007/s00227-012-2099-y
Sequences from this study are available from GenBank (Accession numbers 16S HQ907887–HQ907914; cytb JX435273–JX435297).

Jennings R.M., Etter, R.J. and Ficarra,L. 2013. Population differentiation and species formation in the deep sea: the potential role of environmental gradients and depth. PLoS ONE , 8(10): e77594. https://doi.org/10.1371/journal.pone.0077594
All sequences were deposited in GenBank (Accessions KC563091-KC563901, Table 2).

Sharma, P.P., Zardus, J.D., Boyle, E.E., González, V.L., Jennings, R.M., McIntyre, E., Bouchet, P., Wheeler, W.C., Etter, R.J., and Giribet, G. 2013. Into the deep: A phylogenetic approach to the bivalve subclass Protobranchia. Molecular Phylogenetics and Evolution, 69:188-204. https://doi.org/10.1016/j.ympev.2013.05.018
Sequences from this study are available from GenBank (Accession numbers given in Table 2).

Etter, R.J., Boyle, E.E., Glazier, A., Jennings, R.M., Dutra, E., and Chase, M.R. 2011. Phylogeography of a pan-Atlantic abyssal protobranch bivalve: Implications for evolution in the deep Atlantic. Molecular Ecology, 20:829-843. https://doi.org/10.1111/j.1365-294X.2010.04978.x
Sequences from this study are available from GenBank - accession numbers are HQ452629–HQ452677.

Jennings, R.M., and Etter, R.J. 2011. Exon-Primed, Intron-Crossing (EPIC) loci for five nuclear genes in deep-sea protobranch bivalves: primer design, PCR protocols, and locus utility. Molecular Ecology Resources, 11:1102-1112. https://doi.org/10.1111/j.1755-0998.2011.03038.x
DNA Sequences from this study are available from GenBank - Accessions JF410881– JF411003.
  • Cite as: Etter, Ron J. (2023). GenBank Accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34-39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) (NCEI Accession 0278733). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278733. Accessed [date].
gov.noaa.nodc:0278733
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Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Coverage Description Western North Atlantic (34-39N, 68-70W)
Time Period 2016-09-23 to 2016-09-23
Spatial Bounding Box Coordinates
West:
East:
South:
North:
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
      Navigate directly to the URL for data access and direct download.
  • Etter, R. J. (2016) GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34-39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2016-09-23. https://doi.org/10.26008/1912/bco-dmo.542665.2
    • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2023-05-25
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Etter, Ron J. (2023). GenBank Accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34-39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) (NCEI Accession 0278733). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278733. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords NODC PLATFORM NAMES THESAURUS BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords ICES/SeaDataNet Ship Codes
Place keywords Provider Place Names
Project keywords BCO-DMO Standard Projects Provider Cruise IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Etter, Ron J. (2023). GenBank Accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34-39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) (NCEI Accession 0278733). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278733. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2023-05-25T05:03:31Z - NCEI Accession 0278733 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Platform
  • ENDEAVOR
Last Modified: 2024-05-31T15:15:28Z
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