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Dataset Overview | National Centers for Environmental Information (NCEI)

Bacterial cell counts and Dissolved Organic Carbon (DOC) measurements from R/V Atlantis AT32, AT34, AT38, and AT39-06 in the western North Atlantic Ocean (35°N to 57°N; 45°W) in Nov. 2015, May 2016, Sep 2017, Mar/Apr 2018 (NCEI Accession 0278691)

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This dataset contains biological, chemical, and physical data collected on R/V Atlantis during cruises AT34, AT38, and AT39-06 from 2016-05-11 to 2018-03-20. These data include Carbon, bacterial abundance, depth, and dissolved organic Carbon. The instruments used to collect these data include Fluorescence Microscope, Niskin bottle, Shimadzu TOC-V Analyzer, and Shipboard Incubator. These data were collected by Craig Carlson of University of California-Santa Barbara as part of the "Tracking the temporal and spatial variability of dissolved organic matter, its diagenetic state and bioavailability during various bloom states in the North Atlantic (DOM_SeasonalDynamics)" project and "North Atlantic Aerosols and Marine Ecosystems Study (NAAMES)" program. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2020-09-22.

The following is the text of the dataset description provided by BCO-DMO:

bacterial abundance and DOC

Dataset Description:
This dataset includes analyses from Niskin bottle samples collected on R/V Atlantis cruises AT32, AT34, AT38 and AT39-6 as part of the NASA NAAMES campaign (2015-2018). Reported are bacterial abundances and Dissolved Organic Carbon (DOC) measurements pre- and post-experiment. Remineralization experiments were used to examine the ability of natural assemblages of bacteria to utilize in situ DOM as well as different algal-derived substrates.
  • Cite as: Carlson, Craig (2023). Bacterial cell counts and Dissolved Organic Carbon (DOC) measurements from R/V Atlantis AT32, AT34, AT38, and AT39-06 in the western North Atlantic Ocean (35°N to 57°N; 45°W) in Nov. 2015, May 2016, Sep 2017, Mar/Apr 2018 (NCEI Accession 0278691). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278691. Accessed [date].
gov.noaa.nodc:0278691
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Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 2016-05-11 to 2018-03-20
Spatial Bounding Box Coordinates
West: -46.148
East: -37.514
South: 39.187
North: 56.341
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
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  • Carlson, C. (2020) Bacterial cell counts and Dissolved Organic Carbon (DOC) measurements from R/V Atlantis AT32, AT34, AT38, and AT39-06 in the western North Atlantic Ocean (35°N to 57°N; 45°W) in Nov. 2015, May 2016, Sep 2017, Mar/Apr 2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-09-16. https://doi.org/10.26008/1912/bco-dmo.824623.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2023-05-24
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
Bioassays were conducted at each station using water collected within 10 m depth horizon. Water was gently gravity-filtered serially through 142 mm PC filtration cartridges loaded with either a 1.2- or a 0.2-µm mixed cellulose ester membrane filter. The 1.2 µm filtrate was retained as a bacterioplankton inoculum with diluted large phytoplankton and nanoflagellate grazers while the 0.2 µm fraction was retained as particle-free DOM substrate. When possible, the filtration rig was directly attached to Niskin bottles with platinum-cured silicon tubing and the filtrate was collected into PC carboys. Otherwise, unfiltered water from the Niskin was first drawn into a PC carboy and then filtered into another PC carboy. Each bioassay was initiated by combining the 1.2 µm filtrate with the 0.2 µm filtrate in a 30:70 ratio. A pair of incubation bottles were then rinsed with this water and subsequently filled. Ammendments were added if applicable. 8 pre-combusted (4 hours at 450°C) 40 mL EPA borosilicate glass incubation vials were also rinsed and filled with initial incubation water. Bioassays were maintained in Fisherbrand Isotemp BOD refrigerated incubators. They were kept in darkness for up to 81 days at temperatures as near in situ as logistically possible (±1.5°C). Incubation bottles were sampled over the duration of each campaign, while vials were sacrificially sampled for organic carbon during and beyond the duration of each campaign. Bacterioplankton carbon (BC, µmol C / L) refers to the carbon content of a population at any given time. BC at the initial and stationary growth conditions of each bioassay were estimated by applying empirical carbon conversion factors (CCFs, fg C / cell) to POC estimates. The dissolved organic carbon (DOC) fraction in a bioassay, was estimated by subtracting bacterioplankton cell carbon (µmol C / L) from TOC measurements.
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Carlson, Craig (2023). Bacterial cell counts and Dissolved Organic Carbon (DOC) measurements from R/V Atlantis AT32, AT34, AT38, and AT39-06 in the western North Atlantic Ocean (35°N to 57°N; 45°W) in Nov. 2015, May 2016, Sep 2017, Mar/Apr 2018 (NCEI Accession 0278691). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278691. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords NODC PLATFORM NAMES THESAURUS BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords ICES/SeaDataNet Ship Codes
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Global Change Master Directory (GCMD) Instrument Keywords Originator Instrument Names
Place keywords Provider Place Names
Project keywords BCO-DMO Standard Programs BCO-DMO Standard Projects Provider Cruise IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Carlson, Craig (2023). Bacterial cell counts and Dissolved Organic Carbon (DOC) measurements from R/V Atlantis AT32, AT34, AT38, and AT39-06 in the western North Atlantic Ocean (35°N to 57°N; 45°W) in Nov. 2015, May 2016, Sep 2017, Mar/Apr 2018 (NCEI Accession 0278691). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278691. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2023-05-24T06:22:41Z - NCEI Accession 0278691 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • fluorescence microscope
  • Niskin bottle
Platform
  • R/V Atlantis
Last Modified: 2024-05-31T15:15:28Z
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