Dataset Overview | National Centers for Environmental Information (NCEI)

Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015 (NCEI Accession 0278347)

Preview graphic

This dataset contains biological and survey - biological data collected at American_Samoa during deployment Palumbi_AmSamoa_2013-2015 in the South Pacific Ocean from 2011-04-01 to 2015-12-01. These data include species. The instruments used to collect these data include Automated DNA Sequencer. These data were collected by Dr Stephen R. Palumbi of Stanford University and Luke Thomas of University of Western Australia as part of the "Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa (Bleaching American Samoa)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2019-04-12.

The following is the text of the dataset description provided by BCO-DMO:

Dataset Description:
Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015. All data and samples were collected at depths less than 3.0m.

This dataset includes all sequence data accession numbers for the publication Thomas & Palumbi (2017) housed at The National Center for Biotechnology Information under BioProject PRJNA522016 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA522016).

Dataset Citation

Cite as: Palumbi, Stephen R.; Thomas, Luke (2023). Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015 (NCEI Accession 0278347). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278347. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0278347

Full Text · XML

Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	TSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2011-04-01 to 2015-12-01
Spatial Bounding Box Coordinates	West: -169.655 East: -169.655 South: -14.18 North: -14.18
Spatial Coverage Map

General Documentation

NCEI Dataset Landing Page
Navigate directly to the URL for a descriptive web page with download links.
Descriptive Information
Navigate directly to the URL for a descriptive web page with download links.

Associated Resources

Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Thomas, L. (2019) Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2019-03-18. https://doi.org/10.1575/1912/bco-dmo.762497.1
- https://doi.org/10.1575/1912/bco-dmo.762497.1 (download)
  originator dataset

gov.noaa.nodc:BCO-DMO

Publication Dates	publication: 2023-05-17
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Supplemental Information	Acquisition Description: Seven colonies of A. hyacinthus from the back-reef environment of Ofu Island were tagged, sampled, and monitored at five time-points spanning the bleaching event: before bleaching representing baseline expression levels (August 2011), and then two months (April 2015), six months (August 2015), 10 months (December 2015) and 12 months (February 2016) after initial bleaching was observed in February 2015. Coral nubbins of approximately 24 cm in size were collected from colonies within 3 h of high-tide using garden clippers and preserved in RNAlater. All colonies occurred at depths of approximately 0.51.0 m and were within a 2500 m2area of back-reef. Total RNA was extracted from tissue samples using Qiagen's RNAeasy Plus Kit, and 35 cDNA libraries (seven colonies for five dates) were generated using the Illumina TruSeq RNA Library Prep Kit v2 with Protoscript II Reverse Transcriptase. The 35 libraries were multiplexed and sequenced across three lanes on a Hiseq2500 at the University of Utah Microarray and Genomic Analysis Core Facility. Location: Ofu Island, American Samoa. All data and samples were collected from the lagoon environment in the National Park of American Samoa at depths less than 3.0m.
Purpose	This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Palumbi, Stephen R.; Thomas, Luke (2023). Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015 (NCEI Accession 0278347). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278347. Accessed [date].
Cited Authors	Palumbi, Stephen R. Stanford University Thomas, Luke University of Western Australia
Principal Investigators	Stephen R. Palumbi Stanford University Luke Thomas University of Western Australia (UWA)
Contributors	Stanford University University of Western Australia (UWA)
Resource Providers	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Points of Contact	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1547921 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1547921

Theme keywords	NODC DATA TYPES THESAURUS SPECIES IDENTIFICATION NODC OBSERVATION TYPES THESAURUS biological survey - biological WMO_CategoryCode oceanography BCO-DMO Standard Parameters Date_Month accession number bleach percentage external_link latitude longitude sample identification species Originator Parameter Names accession accession_link bleaching_status colony date latitude longitude sample species
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS Stanford University University of Western Australia NODC SUBMITTING INSTITUTION NAMES THESAURUS Biological and Chemical Oceanography Data Management Office Global Change Master Directory (GCMD) Data Center Keywords BCO-DMO > Biological and Chemical Oceanography Data Management Office
Platform keywords	BCO-DMO Platform Names American_Samoa
Instrument keywords	BCO-DMO Standard Instruments Automated DNA Sequencer Originator Instrument Names Illumina HiSeq 2500
Place keywords	NODC SEA AREA NAMES THESAURUS South Pacific Ocean Global Change Master Directory (GCMD) Location Keywords OCEAN > PACIFIC OCEAN > SOUTH PACIFIC OCEAN Provider Place Names American Samoa
Project keywords	BCO-DMO Standard Projects Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa (Bleaching American Samoa) Provider Deployment IDs Palumbi_AmSamoa_2013-2015 Provider Funding Award Information Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1547921
Keywords	NCEI ACCESSION NUMBER 0278347

Use Constraints	Cite as: Palumbi, Stephen R.; Thomas, Luke (2023). Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015 (NCEI Accession 0278347). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278347. Accessed [date].
Data License	This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License. SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2023-05-17T12:57:29Z - NCEI Accession 0278347 v1.1 was published.
Output Datasets	NCEI Accession 0278347 v1.1 NCEI Accession 0278347 v1.1 (download) published 2023-05-17T12:57:29Z

Last Modified: 2024-05-31T15:15:28Z
For questions about the information on this page, please email: ncei.info@noaa.gov

Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015 (NCEI Accession 0278347)

Follow us

Contact us