Skip to main content
Dataset Overview | National Centers for Environmental Information (NCEI)

Pore water and solid phase iron geochemical data from a coastal Maine intertidal mudflat from November 2015 to November 2016 (NCEI Accession 0278025)

browse graphicPreview graphic
This dataset contains chemical and physical data collected at The Eddy during deployment 2015-16_Sampling_Emerson from 2015-11-18 to 2016-11-09. These data include Fe, depth, and salinity calculated from CTD primary sensors. The instruments used to collect these data include Push Corer, Refractometer, Thermometer, and plate reader. These data were collected by Dr David Emerson of Bigelow Laboratory for Ocean Sciences and Dr Peter Girguis of Harvard University as part of the "Collaborative Research: The Role of Iron-oxidizing Bacteria in the Sedimentary Iron Cycle: Ecological, Physiological and Biogeochemical Implications (SedimentaryIronCycle)" project and "Center for Dark Energy Biosphere Investigations (C-DEBI)" program. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2019-03-15.

The following is the text of the dataset description provided by BCO-DMO:

Pore water and solid phase iron geochemical data

Dataset Description:
Acquisition Description:
Sediment cores were retrieved from bioturbated, intertidal sediments at low tide with a 7.5 cm (inner diameter) clear Plexiglas liner by pushing it directly into the sediment with minimum pressure as not to artificially force the sediment horizons together. The end of the core (i.e., the deepest horizon) was plugged with a rubber stopper and the sediment core was placed on ice. Typical transport back to the laboratory for pore water extraction was 0.5 hours. Sediment temperature and bottom water salinity were recorded at the time of sampling with an alcohol thermometer and refractometer, respectively.

Once back to the laboratory, the cores were removed from ice and 5 cm Rhizons (0.16-0.19 um pore size) were inserted into pre-drilled 7 mm holes at 1 cm depth intervals to a depth of 10 cm. Pore waters were extracted by pulling negative pressure on the Rhizon with a 10 mL sterile syringe and holding the syringe plunger in place with a small wooden block placed between the syringe body and the plunger. Once pore water was extracted in the syringe, it was removed from the Rhizon, dispensed into a 15 mL centrifuge tube, and 250 uL of pore water was immediately transferred to 250 uL of Ferrozine buffer (10 mM in 50 mM HEPES buffer) and read on a MultiSkan MCC plate reader at 562 nm absorbance. The sediment core was then extruded and sliced into 1 cm intervals and dried in an oven at 70-80 degrees C for 24 hours, and then poorly-crystalline iron oxides (i.e., ferrihydrite and lepidocrocite) were extracted with 1 M hydroxylamine HCl in 25 % acetic acid (v/v) for 48 hours on a rotating shaker at 200 rpm. The extractions were allowed to settle for a few hours, then 10 uL was diluted into 990 uL (1:100 dilution) of distilled water containing 100 uL of Ferrozine buffer. The samples were read as above at 562 nm on the Multiskan MCC plate reader.

Note: data were not collected for months of August and October .
  • Cite as: Emerson, David; Girguis, Peter (2023). Pore water and solid phase iron geochemical data from a coastal Maine intertidal mudflat from November 2015 to November 2016 (NCEI Accession 0278025). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278025. Accessed [date].
gov.noaa.nodc:0278025
Download Data
  • HTTPS (download)
    Navigate directly to the URL for data access and direct download.
  • FTP (download)
    These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats
  • TSV
Ordering Instructions Contact NCEI for other distribution options and instructions.
Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 2015-11-18 to 2016-11-09
Spatial Bounding Box Coordinates
West: -69.649
East: -69.649
South: 43.995
North: 43.995
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
      Navigate directly to the URL for data access and direct download.
  • Emerson, D., Girguis, P. (2018) Pore water and solid phase iron geochemical data from a coastal Maine intertidal mudflat from November 2015 to November 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2018-06-01. https://doi.org/10.1575/1912/bco-dmo.737962.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2023-05-11
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Emerson, David; Girguis, Peter (2023). Pore water and solid phase iron geochemical data from a coastal Maine intertidal mudflat from November 2015 to November 2016 (NCEI Accession 0278025). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278025. Accessed [date].
Cited Authors
Principal Investigators
Contributors
Resource Providers
Points of Contact
Publishers
Acknowledgments
Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords BCO-DMO Platform Names
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Originator Instrument Names
Place keywords Provider Place Names
Project keywords BCO-DMO Standard Programs BCO-DMO Standard Projects Provider Deployment IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Emerson, David; Girguis, Peter (2023). Pore water and solid phase iron geochemical data from a coastal Maine intertidal mudflat from November 2015 to November 2016 (NCEI Accession 0278025). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278025. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees
  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2023-05-11T04:23:33Z - NCEI Accession 0278025 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • corer
  • refractometer
Last Modified: 2024-05-31T15:27:35Z
For questions about the information on this page, please email: ncei.info@noaa.gov