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Data from moored instruments (pH, dissolved oxygen, temperature, salinity, PAR, pressure) at 9 depths outside and inside the kelp canopy at Hopkins Marine Station, recorded between June and October 2018 (NCEI Accession 0277933)

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This dataset contains chemical and physical data collected on Mooring - Hopkins Marine Stations during deployments KELP and OUTSIDE in the North Pacific Ocean from 2018-06-07 to 2018-10-04. These data include PAR, dissolved Oxygen, pH, salinity calculated from CTD primary sensors, and water pressure. The instruments used to collect these data include CTD Sea-Bird MicroCAT 37, Dissolved Oxygen Sensor, Onset Pro v2 temperature logger, Photosynthetically Available Radiation Sensor, Pressure Sensor, SeapHOx/SeaFET, and Thermistor. These data were collected by Kerry J. Nickols of California State University Northridge, Yuichiro Takeshita of Monterey Bay Aquarium Research Institute, David Mucciarone, Heidi Hirsh, Robert B. Dunbar, and Stephen G. Monismith of Stanford University, and Sarah Traiger of United States Geological Survey as part of the "Collaborative Research: RUI: Building a mechanistic understanding of water column chemistry alteration by kelp forests: emerging contributions of foundation species (Kelp forest biogeochemistry)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2020-10-16.

The following is the text of the dataset description provided by BCO-DMO:

Dataset Description:
These data are published in Hirsh et al., see related publications section.
  • Cite as: Nickols, Kerry J.; Dunbar, Robert B.; Hirsh, Heidi; Monismith, Stephen G.; Mucciarone, David; Takeshita, Yuichiro; Traiger, Sarah (2023). Data from moored instruments (pH, dissolved oxygen, temperature, salinity, PAR, pressure) at 9 depths outside and inside the kelp canopy at Hopkins Marine Station, recorded between June and October 2018 (NCEI Accession 0277933). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277933. Accessed [date].
gov.noaa.nodc:0277933
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Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Time Period 2018-06-07 to 2018-10-04
Spatial Bounding Box Coordinates
West: -121.902
East: -121.901
South: 36.622
North: 36.622
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
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  • Hirsh, H., Nickols, K. J., Takeshita, Y., Traiger, S., Monismith, S. G., Mucciarone, D., Dunbar, R. B. (2020) Data from moored instruments (pH, dissolved oxygen, temperature, salinity, PAR, pressure) at 9 depths outside and inside the kelp canopy at Hopkins Marine Station, recorded between June and October 2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-09-02. https://doi.org/10.26008/1912/bco-dmo.822549.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2023-05-06
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
The moorings were deployed from June to October 2018. The moorings consisted of a subsurface mooring buoy anchored to a weight so that it was approximately 1 m below the surface at spring low tide. A 5 m line connected the subsurface buoy to a small float at the surface.

Inside Kelp Forest Mooring Instruments:

3 MiniDO2T dissolved oxygen loggers (Precision Measurement Engineering (PME), 5 minute sampling frequency) 3 SBE 56 thermistors (Sea-Bird Electronics, 1 minute sampling frequency) 2 HOBO Pro v2 temperature loggers (Onset Data Loggers, 1 minute sampling frequency) 1 HOBO U20L pressure sensor (Onset Data Loggers, 1 minute sampling frequency) 1 miniPAR sensor (PME, 1 minute sampling frequency). PME miniPAR sensors were paired with PME miniWIPERs set to wipe the PAR sensors every six hours to prevent biofouling. 7 pH loggers were deployed on the kelp mooring between July and October. The kelp mooring configuration included two SeapHOx instrument packages (Bresnahan et al., 2014) deployed 1 meter above the bottom (mab) and just below the subsurface mooring buoy. Each SeapHOx consisted of a Honeywell Durafet pH electrode (Martz et al., 2010), an Aanderaa 4835 oxygen optode, and an SBE-37 MicroCAT CTD equipped with a pressure sensor. The other 5 pH loggers (mFETs) were custom built at the Monterey Bay Aquarium Research Institute utilizing Honeywell Durafet electrodes (Martz et al., 2010). SeapHOxes measured pH, O2, temperature, salinity and pressure every 10 minutes, whereas mFETs measured pH and temperature every 5 minutes. An SBE 37-SM MicroCAT CTD recorder was deployed at mid depth on the mooring beginning in mid-August with sampling frequencies of 5 minutes. A miniDO2T sensor was installed on a surface buoy located ~50 m from the kelp mooring between July 18 and August 1. This two-week miniDO2T deployment provided the only in situ surface O2 data inside the kelp forest.

Outside Kelp Forest Mooring Instruments:

3 MiniDO2T dissolved oxygen loggers (Precision Measurement Engineering (PME), 5 minute sampling frequency) 3 SBE 56 thermistors (Sea-Bird Electronics, 1 minute sampling frequency) 2 HOBO Pro v2 temperature loggers (Onset Data Loggers, 1 minute sampling frequency) 1 HOBO U20L pressure sensor (Onset Data Loggers, 1 minute sampling frequency) 1 miniPAR sensor (PME, 1 minute sampling frequency). PME miniPAR sensors were paired with PME miniWIPERs set to wipe the PAR sensors every six hours to prevent biofouling. 1 pH logger (mFET) was deployed between July and October and measured pH and temperature
every 5 minutes. The mFET was custom built at the Monterey Bay Aquarium Research Institute
utilizing Honeywell Durafet electrodes (Martz et al., 2010). An SBE 37-SM MicroCAT CTD recorder was deployed at 13.5 man beginning in mid-August with
sampling frequencies of 5 minutes.

Calibration by taking discrete samples alongside sensors in situ can lead to relatively large uncertainties, especially in highly dynamic coastal environments (Bresnahan et al. 2014); therefore, we decided to calibrate sensors in a flow through tank where the pH is more stable, and multiple discrete samples for DIC and TA analysis could be collected. Prior to deployment, the mFET sensors logged in a tank for 6 days (3 discrete samples) and the SeapHOxes logged in an adjacent tank for 1 day (2 discrete samples). We estimate the accuracy of the pH sensor data to be ± 0.015.

Oxygen sensors were calibrated by making measurements in a black bucket filled with freshwater while bubbling air for 8 hours. We assumed 100% saturation and applied a gain correction to the raw sensor output (Bittig & Körtzinger, 2015; Bushinsky & Emerson, 2013; Johnson et al., 2015). Because the air-stone was placed at the bottom of the bucket, elsewhere we would expect slight over-saturation. However, since the depth of the bucket was < 40 cm, we estimate the accuracy of this calibration to be better than 1-2%. Post-deployment calibration indicated no drift in the oxygen sensors.
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Nickols, Kerry J.; Dunbar, Robert B.; Hirsh, Heidi; Monismith, Stephen G.; Mucciarone, David; Takeshita, Yuichiro; Traiger, Sarah (2023). Data from moored instruments (pH, dissolved oxygen, temperature, salinity, PAR, pressure) at 9 depths outside and inside the kelp canopy at Hopkins Marine Station, recorded between June and October 2018 (NCEI Accession 0277933). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277933. Accessed [date].
Cited Authors
Principal Investigators
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Acknowledgments
Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Global Change Master Directory (GCMD) Instrument Keywords Originator Instrument Names
Place keywords NODC SEA AREA NAMES THESAURUS Global Change Master Directory (GCMD) Location Keywords Provider Place Names
Project keywords BCO-DMO Standard Projects Provider Deployment IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Nickols, Kerry J.; Dunbar, Robert B.; Hirsh, Heidi; Monismith, Stephen G.; Mucciarone, David; Takeshita, Yuichiro; Traiger, Sarah (2023). Data from moored instruments (pH, dissolved oxygen, temperature, salinity, PAR, pressure) at 9 depths outside and inside the kelp canopy at Hopkins Marine Station, recorded between June and October 2018 (NCEI Accession 0277933). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277933. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees
  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2023-05-06T04:09:37Z - NCEI Accession 0277933 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • CTD
  • oxygen sensor
  • PAR Sensor
Last Modified: 2024-05-31T15:15:28Z
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