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NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) from 2014-06-13 to 2014-06-19 (NCEI Accession 0277722)

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This dataset contains biological data collected on R/V Falkor during cruise FK140613 in the North Pacific Ocean from 2014-06-13 to 2014-06-19. These data include . The instruments used to collect these data include Automated DNA Sequencer, Bioanalyzer, and PCR Thermal Cycler. These data were collected by Dr Erica Goetze of University of Hawaii as part of the "Basin-scale genetics of marine zooplankton (Plankton Population Genetics)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2017-06-12.

The following is the text of the dataset description provided by BCO-DMO:

NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample

Dataset Description:
These data include sample information and accession links to sequence data at The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).

This data submission consists of metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1 meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa

Related dataset containing OTU tables and fasta sequences (representative / most abundance read for each OTU):

Dataset Citation

Cite as: Goetze, Erica (2023). NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) from 2014-06-13 to 2014-06-19 (NCEI Accession 0277722). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277722. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0277722

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Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	TSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2014-06-13 to 2014-06-19
Spatial Bounding Box Coordinates	West: -158 East: -158 South: 22.75 North: 22.75
Spatial Coverage Map

General Documentation

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Descriptive Information
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Associated Resources

Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Goetze, Erica (2017) NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2017-05-25. https://doi.org/10.1575/1912/bco-dmo.704665
- https://doi.org/10.1575/1912/bco-dmo.704665 (download)
  originator dataset

gov.noaa.nodc:BCO-DMO

Publication Dates	publication: 2023-04-20
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Supplemental Information	Acquisition Description: SAMPLE INFORMATION Sample identifiers include the following codes. MOCNESS tow FA3: Night sampling FA4: Day sampling Depth range: N1: 1500-1000m N2: 1000-700m N3: 700-500m N4: 500-300m N5: 300-200m N6: 200-150m N7: 150-100m N8: 100-50m N9: 50m-0m Wet-sieved zooplankton size fractions SF1: 0.2-0.5 mm SF2: 0.5-1.0 mm SF3: 1.0-2.0 mm
Purpose	This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Goetze, Erica (2023). NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) from 2014-06-13 to 2014-06-19 (NCEI Accession 0277722). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277722. Accessed [date].
Cited Authors	Goetze, Erica University of Hawaii
Principal Investigators	Erica Goetze The University of Hawai'i System (UH)
Contributors	The University of Hawai'i System (UH)
Resource Providers	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Points of Contact	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1255697 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=1255697 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1338959 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1338959 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1029478 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1029478

Theme keywords	NODC DATA TYPES THESAURUS DNA NODC OBSERVATION TYPES THESAURUS biological WMO_CategoryCode oceanography BCO-DMO Standard Parameters accession number instrument latitude longitude sample description sample identification MEDATLAS Parameter Usage Vocabulary LATITUDE LONGITUDE Originator Parameter Names analysis_name bioproject_accession biosample_accession design_description instrument_model lat library_ID library_layout library_selection library_source library_strategy lon platform title SeaDataNet Parameter Discovery Vocabulary Reference numbers
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS The University of Hawai'i System NODC SUBMITTING INSTITUTION NAMES THESAURUS Biological and Chemical Oceanography Data Management Office Global Change Master Directory (GCMD) Data Center Keywords BCO-DMO > Biological and Chemical Oceanography Data Management Office
Platform keywords	NODC PLATFORM NAMES THESAURUS R/V Falkor BCO-DMO Platform Names R/V Falkor Global Change Master Directory (GCMD) Platform Keywords Ships ICES/SeaDataNet Ship Codes Falkor (call sign: ZCYL5, ICES code: CIFR, 2012)
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS PCR machine BCO-DMO Standard Instruments Automated DNA Sequencer Bioanalyzer PCR Thermal Cycler Originator Instrument Names Agilent 2100 Bioanalyzer Illumina MiSeq quantitative PCR by the Evolutionary Genetics Core Facility (Hawaii Institute of Marine Biology)
Place keywords	NODC SEA AREA NAMES THESAURUS North Pacific Ocean Global Change Master Directory (GCMD) Location Keywords OCEAN > PACIFIC OCEAN > NORTH PACIFIC OCEAN Provider Place Names Station ALOHA
Project keywords	BCO-DMO Standard Projects Basin-scale genetics of marine zooplankton (Plankton Population Genetics) Provider Cruise IDs FK140613 Provider Funding Award Information Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1029478 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1255697 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1338959
Keywords	NCEI ACCESSION NUMBER 0277722

Use Constraints	Cite as: Goetze, Erica (2023). NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) from 2014-06-13 to 2014-06-19 (NCEI Accession 0277722). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277722. Accessed [date].
Data License	This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License. SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2023-04-20T04:58:31Z - NCEI Accession 0277722 v1.1 was published.
Output Datasets	NCEI Accession 0277722 v1.1 NCEI Accession 0277722 v1.1 (download) published 2023-04-20T04:58:31Z

Acquisition Information (collection)
Instrument	PCR machine
Platform	R/V Falkor

Last Modified: 2024-05-31T18:50:46Z
For questions about the information on this page, please email: ncei.info@noaa.gov

NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) from 2014-06-13 to 2014-06-19 (NCEI Accession 0277722)

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