Dataset Overview | National Centers for Environmental Information (NCEI)

Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018 (NCEI Accession 0277719)

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This dataset contains biological and survey - biological data collected on R/V Atlantis during cruise AT39-05 on 2018-03-11. These data include abundance and taxon. The instruments used to collect these data include Mass Spectrometer. These data were collected by Mak A. Saito of Woods Hole Oceanographic Institution as part of the "Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)", "Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)", "Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)", and "New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)" projects and "Marine Microbiology Initiative (MMI)" program. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2020-10-08.

The following is the text of the dataset description provided by BCO-DMO:

Dataset Description:
Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018. These data were published in Held et al. (2020).

The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [1] partner repository with the dataset identifier PXD016330 and 10.6019/PXD016330 but are not yet public.
* Project Name: Trichodesmium single colony metaproteomes field station Tricolim_19
* Project accession: PXD016330
* Project https://doi.org/10.6019/PXD016330

Dataset Citation

Cite as: Saito, Mak A. (2023). Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018 (NCEI Accession 0277719). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277719. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0277719

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Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	CSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2018-03-11 to 2018-03-11
Spatial Bounding Box Coordinates	West: 65.22 East: 65.22 South: 17.02 North: 17.02
Spatial Coverage Map

General Documentation

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Descriptive Information
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Associated Resources

Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Saito, M. A. (2020) Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-01-10. https://doi.org/10.26008/1912/bco-dmo.786694.1
- https://doi.org/10.26008/1912/bco-dmo.786694.1 (download)
  originator dataset

gov.noaa.nodc:BCO-DMO

Publication Dates	publication: 2023-04-20
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Supplemental Information	Acquisition Description: A 200mm plankton net was deployed to ~20m depth, then recovered to just below surface, repeating five times. Trichodesmium colonies were hand-picked into 0.2mm filtered surface seawater, rinsed twice in 0.2mm filtered surface seawater, and decanted onto a 0.2-4mm Supor filter (indicated in sample provenance table, see dataset https://www.bco-dmo.org/dataset/787093). Proteins were extracted and trypsin digested in-gel following Saito et al., 2014 (Science) with the following modifications: organic precipitation was skipped, benzonase nuclease treatment was performed instead to dissolve DNA/RNA material. Peptides were analyzed by LC-MS/MS in data discovery mode on a Thermo Orbitrap Fusion. Full details will be reported in Held et al. (in prep) Location: North Atlantic surface waters 65.22 W 17.02 N
Purpose	This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Saito, Mak A. (2023). Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018 (NCEI Accession 0277719). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277719. Accessed [date].
Cited Authors	Saito, Mak A. Woods Hole Oceanographic Institution
Principal Investigators	Mak A. Saito Woods Hole Oceanographic Institution (WHOI)
Contributors	Woods Hole Oceanographic Institution (WHOI)
Resource Providers	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Points of Contact	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding provided by Gordon and Betty Moore Foundation (GBMF) Award Number: GBMF3934 Funding provided by Gordon and Betty Moore Foundation: Marine Microbiology Initiative (MMI) Award Number: GBMF3782 Award URL: https://www.moore.org/grant-detail?grantId=GBMF3782 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1657766 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1657766 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1850719 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1850719

Theme keywords	NODC DATA TYPES THESAURUS species abundance TAXONOMIC CODE NODC OBSERVATION TYPES THESAURUS biological survey - biological WMO_CategoryCode oceanography BCO-DMO Standard Parameters abundance sample description taxon Originator Parameter Names BATS_01b BATS_01c BATS_01d HOT_01a HOT_01b JC150_01a JC150_01b JC150_01c JC150_02a JC150_02b JC150_03a JC150_03b JC150_03c JC150_04a JC150_05a JC150_05b JC150_05c JC150_06a JC150_07a JC150_07b JC150_07c KO_Annotation Pfam_Annotation Protein_Accession Protein_Product_Name Taxonomy Tricolim_03a Tricolim_03b Tricolim_13a Tricolim_14b Tricolim_15a Tricolim_15b Tricolim_15c Tricolim_15d Tricolim_16a Tricolim_16b Tricolim_18a Tricolim_18b Tricolim_18c Tricolim_19a Tricolim_19b Tricolim_19c
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS Woods Hole Oceanographic Institution NODC SUBMITTING INSTITUTION NAMES THESAURUS Biological and Chemical Oceanography Data Management Office Global Change Master Directory (GCMD) Data Center Keywords BCO-DMO > Biological and Chemical Oceanography Data Management Office WHOI > WOODS HOLE OCEANOGRAPHIC INSTITUTION
Platform keywords	NODC PLATFORM NAMES THESAURUS R/V Atlantis BCO-DMO Platform Names R/V Atlantis Global Change Master Directory (GCMD) Platform Keywords Ships ICES/SeaDataNet Ship Codes ATLANTIS (call sign: KAQP, ICES code: 33AT, 1997)
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS mass spectrometer BCO-DMO Standard Instruments Mass Spectrometer Global Change Master Directory (GCMD) Instrument Keywords MASS SPECTROMETERS > MASS SPECTROMETERS Originator Instrument Names Thermo Orbitrap Fusion mass spectrometer
Place keywords	Provider Place Names Tropical and subtropical Atlantic; 20 N - 8 S, 22 W - 67 W
Project keywords	BCO-DMO Standard Programs Marine Microbiology Initiative (MMI) BCO-DMO Standard Projects Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses) Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim) Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito) New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech) Provider Cruise IDs AT39-05 Provider Funding Award Information Funding provided by Gordon and Betty Moore Foundation (GBMF) Award Number: GBMF3934 Funding provided by Gordon and Betty Moore Foundation: Marine Microbiology Initiative (MMI) Award Number: GBMF3782 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1657766 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1850719
Keywords	NCEI ACCESSION NUMBER 0277719

Use Constraints	Cite as: Saito, Mak A. (2023). Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018 (NCEI Accession 0277719). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277719. Accessed [date].
Data License	This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License. SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2023-04-20T04:45:34Z - NCEI Accession 0277719 v1.1 was published.
Output Datasets	NCEI Accession 0277719 v1.1 NCEI Accession 0277719 v1.1 (download) published 2023-04-20T04:45:34Z

Acquisition Information (collection)
Instrument	mass spectrometer
Platform	R/V Atlantis

Last Modified: 2024-06-04T18:34:55Z
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Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018 (NCEI Accession 0277719)

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