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Physical and chemical metadata for microbiological samples from R/V New Horizon cruises GoCAL1, GoCAL2, GoCAL3 in the Guaymas Basin, Gulf of California from 2004-2005 (Guaymas plumes project) (NCEI Accession 0277446)

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This dataset contains chemical and physical data collected on R/V New Horizon during cruises GoCAL1, GoCAL2, and GoCAL3 from 2004-07-11 to 2005-02-05. These data include Manganese, depth, dissolved Oxygen, salinity calculated from CTD primary sensors, and water temperature. The instruments used to collect these data include CTD Sea-Bird, Inductively Coupled Plasma Mass Spectrometer, Niskin bottle, and Transmissometer. These data were collected by Gregory J. Dick of University of Michigan as part of the "Linking biogeochemistry and microbial community dynamics in deep-sea hydrothermal plumes (Guaymas plumes)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2023-01-23.

The following is the text of the dataset description provided by BCO-DMO:

Physical and chemical metadata for microbiological samples from Guaymas Basin plumes.

Dataset Description:
Physical and chemical metadata (sal, Mn, O2, temp, etc.) for microbiological samples from Guyamas Basin plumes.

The following publications are associated with this data:
Anantharaman, K.A., M.B. Duhaime, J.A. Breier, K. Wendt, B.M. Toner, and G.J. Dick (2014). Sulfur oxidation genes in diverse deep-sea viruses. Science 344: 757-760. https://doi.org/10.1126/science.1252229

Li, M., B.M. Toner, B.J. Baker, J.A. Breier, C.S. Sheik, and G.J. Dick (2014). Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents. Nature Communications 5: 3192. https://doi.org/10.1038/ncomms4192

Li, M., S. Jain, B.J. Baker, C. Taylor, and G.J. Dick (2014). Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume. Environmental Microbiology 16: 60-71. https://doi.org/10.1111/1462-2920.12182

Sheik, C.S. 2, S. Jain, and G.J. Dick (2014). Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics. Environmental Microbiology 16: 304-317. https://doi.org/10.1111/1462-2920.12165

Baker, B.J., C.S. Sheik, C.A. Taylor, S. Jain, A. Bhasi, J.D. Cavalcoli, and G.J. Dick (2013). Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling. The ISME Journal 7: 1962-1973. https://doi.org/10.1038/ismej.2013.85

Dick, G.J., K. Anantharaman, B.J. Baker, M. Li, D.C. Reed, and C.S. Sheik (2013). Hydrothermal vent plume microbiology: ecological and biogeographic linkages to seafloor and water column habitats. Frontiers in Microbiology 4: 124. https://doi.org/10.3389/fmicb.2013.00124

Anantharaman, K., J.A. Breier, C.S. Sheik, and G.J. Dick (2013). Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea bacteria. Proceedings of the National Academy of Sciences 110: 330-335. https://doi.org/10.1073/pnas.1215340110

Baker, B.J., R.A. Lesniewski, and G.J. Dick. Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume (2012). The ISME Journal 6: 2269-2279. https://doi.org/10.1038/ismej.2012.64

Lesniewski, R.A., S. Jain, P.D. Schloss, K. Anantharaman, and G.J. Dick (2012). The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and chemolithotrophs. The ISME Journal 6: 2257-2268. https://doi.org/10.1038/ismej.2012.63

Dataset Citation

Cite as: Dick, Gregory J. (2023). Physical and chemical metadata for microbiological samples from R/V New Horizon cruises GoCAL1, GoCAL2, GoCAL3 in the Guaymas Basin, Gulf of California from 2004-2005 (Guaymas plumes project) (NCEI Accession 0277446). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277446. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0277446

Full Text · XML

Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	TSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2004-07-11 to 2005-02-05
Spatial Bounding Box Coordinates	West: -111.4109 East: -110.72388 South: 26.37925 North: 27.506
Spatial Coverage Map

General Documentation

NCEI Dataset Landing Page
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Descriptive Information
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Associated Resources

Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Dick, G. J. (2014) Physical and chemical metadata for microbiological samples from R/V New Horizon cruises GoCAL1, GoCAL2, GoCAL3 in the Guaymas Basin, Gulf of California from 2004-2005 (Guaymas plumes project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2014-12-19. https://doi.org/10.26008/1912/bco-dmo.543286.1
- https://doi.org/10.26008/1912/bco-dmo.543286.1 (download)
  originator dataset

gov.noaa.nodc:BCO-DMO

Publication Dates	publication: 2023-04-03
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Supplemental Information	Acquisition Description: Hydrothermal plumes were detected by turbidity anomalies as measured by an air-calibrated transmissometer (WetLabs) on a CTD rosette (Sea-Bird). Water samples were collected in 10-L niskin bottles by CTD Rosette (Sea-Bird). Samples were transferred from niskin bottles to acidwashed 50 mL polypropylene tubes. Samples for dissolved Mn (dMn) were filtered through 0.2 um acid-washed nucleopore polycarbonate filters within 1 h of collection. Filtrate (dMn) and unfiltered total Mn samples (tMn) were stabilized by acidification acidification with Optima grade nitric acid to a pH of <2 and stored at 4 degrees C until analysis. All shipboard manipulations were performed in a laminar flow hood with clean techniques. Mn concentrations were determined on a Thermoquest Finnigan Element 2 double focusing, single collector, magnetic sector inductively coupled plasma mass spectrometer (ICP-MS) at the SIO unified laboratory analytical facility. ICP-MS was done at low resolution following instrument and induction parameters described previously (Field et al., 1999). Samples were diluted 1:50 in 2% nitric acid in quartz-distilled (QD) water prior to analysis. A calibration curve was prepared as described previously (Rodushkin and Ruth, 1998) using matrix-matched external standards made with 2% natural seawater stripped of metals by precipitation with Optima ammonium hydroxide. Indium (1 ppb) was used as an internal standard in all standards and samples. Standard additions (Willard et al., 1965) were used to rule out a matrix effect. To confirm analytical accuracy, reference waters CASS-4 and NASS-5 (Verplank et al., 2001) were included in the analysis as samples. Our experimentally determined average Mn concentration for CASS was 56 ± 10 nM (reported to be 51 nM) and for NASS-5 it was16 ± 8 nM (reported to be 17 nM). Six samples from station 1 were collected, processed and analyzed in duplicate. The average standard deviation was 8 nM, which includes variation due to both sampling and analytical error.
Purpose	This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Dick, Gregory J. (2023). Physical and chemical metadata for microbiological samples from R/V New Horizon cruises GoCAL1, GoCAL2, GoCAL3 in the Guaymas Basin, Gulf of California from 2004-2005 (Guaymas plumes project) (NCEI Accession 0277446). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277446. Accessed [date].
Cited Authors	Dick, Gregory J. University of Michigan
Principal Investigators	Gregory J. Dick University of Michigan
Contributors	University of Michigan
Resource Providers	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Points of Contact	Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1029242 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1029242 Funding provided by Gordon and Betty Moore Foundation (GBMF) Award Number: GBMF2609 Award URL: http://www.moore.org/grants/list/GBMF2609

Theme keywords	NODC DATA TYPES THESAURUS DEPTH - OBSERVATION DISSOLVED OXYGEN MANGANESE SALINITY WATER TEMPERATURE NODC OBSERVATION TYPES THESAURUS chemical physical WMO_CategoryCode oceanography BCO-DMO Standard Parameters Manganese cast date day of month depth depth_w dissolved Oxygen filter_size latitude longitude month of year no standard parameter salinity calculated from CTD primary sensors sample identification sample type water temperature year Global Change Master Directory (GCMD) Science Keywords EARTH SCIENCE > OCEANS > OCEAN CHEMISTRY > OXYGEN EARTH SCIENCE > OCEANS > OCEAN TEMPERATURE > WATER TEMPERATURE EARTH SCIENCE > OCEANS > SALINITY/DENSITY > SALINITY Originator Parameter Names Mn_diss Mn_tot O2 cast date day depth depth_w filter_pore_size filter_type lat lon month sal sample sample_type temp year
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS University of Michigan NODC SUBMITTING INSTITUTION NAMES THESAURUS Biological and Chemical Oceanography Data Management Office Global Change Master Directory (GCMD) Data Center Keywords BCO-DMO > Biological and Chemical Oceanography Data Management Office
Platform keywords	NODC PLATFORM NAMES THESAURUS NEW HORIZON BCO-DMO Platform Names R/V New Horizon Global Change Master Directory (GCMD) Platform Keywords Ships ICES/SeaDataNet Ship Codes NEW HORIZON (call sign: WKWB, ICES code: 32NM, 1978)
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS bottle CTD mass spectrometer transmissometer BCO-DMO Standard Instruments CTD Sea-Bird Inductively Coupled Plasma Mass Spectrometer Niskin bottle Transmissometer Global Change Master Directory (GCMD) Instrument Keywords CTD > Conductivity, Temperature, Depth MASS SPECTROMETERS > MASS SPECTROMETERS TRANSMISSOMETERS Originator Instrument Names CTD Sea-Bird Niskin bottle Thermoquest Finnigan Element 2 Transmissometer
Place keywords	Provider Place Names Guaymas Basin, Gulf of California
Project keywords	BCO-DMO Standard Projects Linking biogeochemistry and microbial community dynamics in deep-sea hydrothermal plumes (Guaymas plumes) Provider Cruise IDs GoCAL1 GoCAL2 GoCAL3 Provider Funding Award Information Funding provided by Gordon and Betty Moore Foundation (GBMF) Award Number: GBMF2609 Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1029242
Keywords	NCEI ACCESSION NUMBER 0277446

Use Constraints	Cite as: Dick, Gregory J. (2023). Physical and chemical metadata for microbiological samples from R/V New Horizon cruises GoCAL1, GoCAL2, GoCAL3 in the Guaymas Basin, Gulf of California from 2004-2005 (Guaymas plumes project) (NCEI Accession 0277446). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277446. Accessed [date].
Data License	This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License. SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2023-04-03T13:07:03Z - NCEI Accession 0277446 v1.1 was published.
Output Datasets	NCEI Accession 0277446 v1.1 NCEI Accession 0277446 v1.1 (download) published 2023-04-03T13:07:03Z

Acquisition Information (collection)
Instrument	bottle CTD mass spectrometer transmissometer
Platform	NEW HORIZON

Last Modified: 2024-06-04T18:34:55Z
For questions about the information on this page, please email: ncei.info@noaa.gov

Physical and chemical metadata for microbiological samples from R/V New Horizon cruises GoCAL1, GoCAL2, GoCAL3 in the Guaymas Basin, Gulf of California from 2004-2005 (Guaymas plumes project) (NCEI Accession 0277446)

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