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Results from trace metal controlled diel microarray experiments with diatoms carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011 (NCEI Accession 0277415)

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This dataset contains biological, chemical, and survey - biological data collected at Rutgers_Newark during deployment lab_Kustka_Allen at Newark, NJ on 2012-06-27. These data include pH and species. These data were collected by Andrew E Allen of J. Craig Venter Institute as part of the "Expression profiling and functional genomics of a pennate diatom: Mechanisms of iron acquisition, stress acclimation, and recovery (Pennate Diatom Genomics)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2023-01-23.

The following is the text of the dataset description provided by BCO-DMO:

Trace metal controlled diel microarray experiments with diatoms.

Dataset Description:
Ten diel microarray experiments were completed (seven for P. tricornutum encompassing three Fe concentrations, and three for T. pseudonana encompassing two Fe concentrations).
  • Cite as: Allen, Andrew E (2023). Results from trace metal controlled diel microarray experiments with diatoms carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011 (NCEI Accession 0277415). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277415. Accessed [date].
gov.noaa.nodc:0277415
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Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Coverage Description Newark, NJ
Time Period 2012-06-27 to 2012-06-27
Spatial Bounding Box Coordinates
West:
East:
South:
North:
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
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  • Allen, A. (2012) Results from trace metal controlled diel microarray experiments with diatoms carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2012-06-27. https://doi.org/10.1575/1912/bco-dmo.3667.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2023-04-03
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
The following description is from a final report for an NSF OCE award provided by the dataset contact.

As biomass increases, steady state Fe prime invariably changes; this was minimized to less than 5% under all Fe conditions by making modifications to the Aquil recipe. In addition, excursions in media pH (which also change Fe' prime) were minimized by acclimating cells to pH buffer (EPPS) treated with chelex-100 resin.

A maximum of 750 pmol/L Fe prime is assumed because of Fe hydroxide precipitation, but for simplicity, the investigators report the results as Fe prime even at concentrations exceeding this maximum. Steady-state uptake rates for several diatoms continue to increase with increasing total Fe within the region of Fe hydroxide precipitation (Sunda and Huntsman 1995; Mar Chem 50:189).

In T. pseudonana experiment E, addition of Fe to remaining low Fe cultures after diel sampling resulted in an increase in growth rate after 24 h, confirming growth rate limitation by Fe. The similar Fv/Fm values under low and high Fe are consistent with the data of Price 2005 (Limnol. Oceanogr. 50:1159).

In P. tricornutum experiment C, the pH buffer stock solution was not properly buffered before use in cultures. While these particular experiments will need to be repeated, these samples may be useful for comparing the diatom transcriptomes during holocene and anthropocene conditions, as these pH values are consistent with predicted values for 2100 (Gruber et al. 1996 Global Biogeochemical Cycles).
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Allen, Andrew E (2023). Results from trace metal controlled diel microarray experiments with diatoms carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011 (NCEI Accession 0277415). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277415. Accessed [date].
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Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords
Place keywords Provider Place Names
Project keywords BCO-DMO Standard Projects Provider Deployment IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Allen, Andrew E (2023). Results from trace metal controlled diel microarray experiments with diatoms carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011 (NCEI Accession 0277415). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277415. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees
  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2023-04-03T12:31:38Z - NCEI Accession 0277415 v1.1 was published.
Output Datasets
Last Modified: 2024-05-31T15:15:28Z
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