Respiration rates and protein content of larvae from experiments investigating heat priming in Nematostella vectensis from 2023-05-08 to 2023-08-02 (NCEI Accession 0291613)
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title: Respiration rates and protein content of larvae from experiments investigating heat priming in Nematostella vectensis from 2023-05-08 to 2023-08-02 (NCEI Accession 0291613)
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abstract: This dataset contains biological and chemical data collectedat Kaneohe Bay, Oahu, HI; Heron Island, Queensland, Australia from 2023-05-08 to 2023-08-02. These data include oxygen respiration rates from in situ incubation and proteins. The instruments used to collect these data include Camera, Centrifuge, In-situ incubator, Microscope - Optical, Oxygen Microelectrode Sensor, Oxygen Sensor, Thermal Cycler, ruler, and ultrasonic cell disrupter (sonicator). These data were collected by Katie Barott of University of Pennsylvania as part of the "Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2024-03-27. The following is the text of the dataset description provided by BCO-DMO: Heat priming in Nematostella vectensis: Respiration rates and protein content of larvae Dataset Description: This dataset includes data pertaining to the respiration rates and protein content of larvae. See related datasets for other results from these experiments. These data and results are published in Glass et al. (2023) (https://doi.org/10.7717/peerj.16574 ). Methods and Sampling: Summary: Development data were collected via visual inspection of animals under brightfield illumination; animals were scored according to developmental stage (planula or post-planula). Dose-response curve data for larval heat tolerance were collected by exposing animals to heat ramps peaking at temperatures between 39-43°C, followed by visual scoring of mortality after 48 hours. Heat shock protein 70 (HSP70) expression was determined via Western blotting according to standard protocols. Sizes of larvae and juveniles (body column lengths) were measured from calibrated images of animals collected via brightfield microscopy. Respiration rates were determined using a Presens SensorDish Reader. Protein content of larvae was determined via a Bradford assay according to standard protocols. The following methods are excerpted from Glass et al. (2023) (https://doi.org/10.7717/peerj.16574 ). Adult collection, culture, and sexual reproduction Adult Nematostella vectensis sea anemones were collected from a salt marsh in Brigantine, New Jersey in the fall of 2020. Following transport to the laboratory, anemones were kept in 12 parts per thousand (ppt) artificial seawater (1/3-ASW; Spectrum Brands, Madison, WI, USA) at 18 degrees Celsius (°C) in a dark incubator (Boekel Scientific, Feasterville Trevose, PA, USA). Animals were fed twice per week with Artemia nauplii (Brine Shrimp Direct, Ogden, UT, USA) with water changes occurring every 2 weeks for approximately 2.5 years. Spawning was induced using a standard method for N. vectensis (Hand & Uhlinger, 1992; Fritzenwanker & Technau, 2002; Stefanik, Friedman & Finnerty, 2013). As culture containers housed both male and female anemones, eggs were left to fertilize during spawning and then transferred to a plastic dish with ~25 milliliters (mL) new 1/3-ASW. Fertilized embryos were then held at 18 °C in the dark for 3 days. Priming treatment and larval culture At 3 days post-fertilization (DPF), 200 swimming planula larvae were pipetted into each of 15 conical tubes (15 mL), for a total of three replicate tubes of 200 larvae (N = 600 larvae priming temperature⁻¹) for each of the five priming temperature treatments: 18 °C (control), 24 °C, 30 °C, 35 °C, and 39 °C. Tubes were placed in water baths (Thermo Fisher Scientific, Waltham, MA, USA) set to each treatment temperature for 1 hour. Following the treatment period, tubes containing larvae were poured into petri dishes (15 mL capacity) and a partial water change was performed by aspirating and replacing ~7.5 mL (~50%) 1/3-ASW; dishes were then held at 18 °C in the dark for the remainder of the experiment. The day after the priming treatment, one dish of larvae primed at 39 °C displayed 100% mortality along with dense overgrowth of an unidentified microbe, and was therefore removed from the experiment. All other larvae were left unfed and in the same water for the remainder of the short-term experiment (11 days in total). For the long-term experiment, this entire procedure was repeated for a second cohort of larvae, which were held at 18 °C for 6 weeks following priming at 3 DPF. In both experiments, control animals were kept at 18 °C for the entire experiment duration, having gone through the priming treatment but without a change in temperature. Image collection and quantification of growth and development Each day following the priming treatment (4-11 DPF), dishes containing larvae were individually removed from the incubator and photographed in a single, haphazardly chosen region under a dissecting microscope (Leica MZ12; Leica, Wetzlar, Germany) with a camera attachment (Retiga R3 CCD), after which they were returned to the incubator. Each photograph contained at least 20 larvae, and microscope settings were unchanged between dishes; a ruler was also photographed each day using the same microscope settings. To quantify larval growth, images were analyzed in FIJI (Schindelin et al., 2012); the ruler image was used to set the scale, and then the line tool was used to individually measure the lengths along the longest axis of at least 20 larvae per photograph (N = 40-60 larvae priming temperature⁻¹ time point⁻¹). Next, developmental progression was quantified from the images by counting the number of larvae clearly past the planula stage (i.e., not a homogenous oval shape), which was divided by the total number of larvae in each image and then converted to a percentage of "post-planula" larvae (N = 17-129 larvae priming temperature⁻¹ time point⁻¹). Respiration and total protein measurements At 4, 7, and 11 DPF, 15 larvae per culture dish (N = 30-45 larvae priming temperature⁻¹ time point⁻¹) were transferred to a 24-well plate (N = 1 well dish⁻¹) with oxygen sensor spots (Loligo Systems, Viborg, Denmark). All wells were filled to capacity (80 microliters (μL)) with 1/3-ASW, and 3-4 wells were also filled with culture water without larvae to serve as controls. The plate was sealed with an adhesive plate cover and placed on a calibrated PreSens SensorDish Reader (Precision Sensing, Regensburg, Germany) at room temperature (~21 °C) under ambient lighting. The oxygen concentration (micromoles oxygen per liter (μmol O2 L⁻¹)) in each well was recorded every 15 seconds for 1 hour, during which conditions remained normoxic (>180 μmol O2 L⁻¹). Following respiration measurements, larvae in each well (N = 15 larvae) were transferred to 1.5 mL tubes, seawater was removed, and the tubes were frozen and stored at -80 °C. Tubes containing larvae were later thawed on ice, and 60 μL of 1x tris-NaCl-EDTA lysis buffer supplemented with dithiothreitol, protease inhibitor cocktail (Thermo Fisher Scientific, Waltham, MA, USA), and phosphatase inhibitors (Roche, Basel, Switzerland), were added to each tube. Next, larvae were lysed in a water bath sonicator (Diagenode UCD-200; Diagenode Inc., Denville, NJ, USA) at 4 °C for 5 min with a 30:60 seconds on:off cycle. Following sonication, tubes were centrifuged (1,500 × g for 5 min at 4 °C) and the protein concentrations of the supernatants were determined in triplicate using a Bradford assay with a bovine serum albumin standard curve. Due to defects in the plastic of the 1.5 mL tubes used for total protein assays, six of the 42 protein samples were lost during processing. However, at least one sample was processed for each time point and priming temperature combination, with the exception of 24 °C at 7 DPF. To determine respiration rates, the rate of oxygen consumption for each well was determined as the slope of a linear best-fit line of the oxygen level in the well over time, and the average rate for the control wells was subtracted from the wells containing larvae. The absolute values of the slopes were then converted to pmol O2 minute⁻¹ μg protein⁻¹ by multiplying by 1,000 and the volume of the wells (80 μL), and dividing by the total protein. Heat tolerance measurements Larval heat tolerance was determined at 4, 7, and 11 DPF using previously established methods (Rivera et al., 2021; Glass et al., 2023). Specifically, six larvae from each culture dish were exposed to each of the following peak temperatures: 39 °C, 40 °C, 41 °C, 42 °C, or 43 °C, yielding 2–3 dose-response curves (N = 30 larvae curve⁻¹) per priming temperature. Specifically, individual larvae were pipetted into wells of a 96-well PCR plate with 100 μL of 1/3-ASW, and plates were sealed with an adhesive plate cover to prevent evaporation during the assay. Thermocyclers (Thermo Fisher Scientific, Waltham, MA, USA) were used to generate the heat ramps, and were programmed as follows: (i) 1 min at 25 °C; (ii) 4 min at 30 °C; (iii) 4 min at 38 °C; (iv) 1 h at peak temperature (39-43 °C); (v) 4 min at 38 °C; (vi) 4 min at 30 °C; and (vii) infinite hold at 22 °C. Following completion of the heat ramp, the plates were uncovered and placed at 18 °C for 48 h, after which larvae were scored as dead (visible tissue lysis) or alive (no visual abnormalities; often swimming). For each dose-response curve, the proportion of larvae surviving at each peak temperature was calculated by dividing the number of larvae surviving by the total number of larvae treated. Data pertaining to proportion survival were used to calculate lethal temperature 50s (LT50s) for each dose-response curve as detailed below. Western blotting for heat shock protein 70 (HSP70) Following the extraction of proteins and quantification via a Bradford assay, equal amounts (micrograms (μg)) of protein in lysis buffer from each group of larvae collected at 11 DPF (N = 2-3 groups of 15 larvae priming temperature⁻¹) were combined with Laemlli buffer (Bio-Rad, Hercules, CA, USA), denatured at 70 °C for 15 minutes, and loaded at a target amount of 2.02 μg protein well⁻¹ into a 4-12% tris-glycine gel. Next, electrophoresis was performed for 30 minutes at 60 volts (V) followed by 1 hour at 120 V, and proteins were then transferred to a polyvinylidene fluoride membrane (100 V for 100 minutes at 4 °C). Following transfer, the membrane was blocked for 1 hour in blocking buffer (5% w/v bovine serum albumin in tris-buffered saline (TBS) with 0.1% v/v Tween-20 (TBST)) and incubated with 0.55 μg mL⁻¹ polyclonal antibodies for HSP70 (Novus Biologicals, Centennial, CO, USA), which were chosen based on the target epitope's ability to bind to all five known isoforms of N. vectensis HSP70 (Waller et al., 2018; Knighton et al., 2019). Next, the membrane was washed (3 × 10 minutes with TBST) and a secondary antibody (anti-rabbit IgG with horseradish peroxidase) was added for 1 hour before final washing (3 × 10 min with TBST followed by 1 × 10 min with TBS), treatment with chemiluminescence reagents (Thermo Fisher Scientific, Waltham, MA, USA), and imaging on an Amersham Imager 600 (General Electric, Boston, MA, USA). After initial imaging, the membrane was probed for β-tubulin using 2.5 μg mL⁻¹ monoclonal antibodies (Cell Signaling Technology, Danvers, MA, USA) and reimaged. Long-term growth and heat tolerance experiments In order to characterize the persistence of heat priming effects on growth and heat tolerance, a second cohort of larvae was produced 2 weeks after the initial spawning by the same adult population and exposed to the same priming treatment at 3 DPF as described above. Following priming, larvae were kept in culture through 6 weeks post-fertilization (WPF) at 18 °C in the dark, where they progressed to the juvenile stage and began to grow tentacles. Animals were fed twice per week (i.e., every 3-4 days) after settlement (~7 DPF) with homogenized Artemia nauplii . Specifically, 3 mL of live Artemia nauplii were homogenized in a 15 mL conical using a rotostator at 20,000 rpm for 10 seconds, and 200 μL of the resulting slurry was added to each culture dish. Within 2-3 hours after feeding, a partial water change was performed for each dish by aspirating and replacing 5-7 mL (33-50%) of 1/3-ASW. Images were collected weekly as described above to characterize long-term effects of priming on growth, and the number of tentacles possessed by each juvenile in the images was also quantified. After 6 weeks, juvenile heat tolerance was determined via a single-temperature heat challenge at 42 °C due to fewer juveniles in the long-term priming experiment vs the short-term experiment. Specifically, eight juveniles from each culture dish (N = 24 juveniles priming temperature⁻¹) were exposed to a heat ramp peaking at 42 °C for 1 hour then returned to 18 °C. While juveniles were intended to be monitored at intervals over 48 hours to generate dose-response curves over time, >60% mortality for all groups at 21 hours precluded this procedure, so the assay was concluded at that time. Finally, the number of surviving juveniles was divided by the number treated to obtain the proportion surviving.
purpose: This dataset is available to the public for a wide variety of uses including scientific research and analysis.
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keyword:
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Anchor: http://lod.bco-dmo.org/id/instrument/520 Retiga R3 microscope camera
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Anchor: http://lod.bco-dmo.org/id/instrument/629890 centrifuge
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keyword:
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useLimitation: Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
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description: Kaneohe Bay, Oahu, HI; Heron Island, Queensland, Australia
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beginPosition: 2023-05-08
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supplementalInformation: (missing)
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distributionInfo: (MD_Distribution)
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fees: In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
orderingInstructions: Contact NCEI for other distribution options and instructions.
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metadataMaintenance: (MD_MaintenanceInformation)
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role: (CI_RoleCode) custodian
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acquisitionInformation: (MI_AcquisitionInformation)
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: camera
type: camera
description: An instrument for recording images.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: microscope
type: microscope
description: instrument is used in lab analyses A microscope is an instrument used to see objects that are too small for the naked eye.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: oxygen sensor
type: oxygen sensor
description: Any instrument that measures oxygen content in a compound.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: PCR machine
type: PCR machine
description: thermal cycler, thermocycler, PCR machine, DNA amplifier The thermal cycler (also known as a thermocycler, PCR machine or DNA amplifier) is a laboratory apparatus most commonly used to amplify segments of DNA via the polymerase chain reaction (PCR). https://en.wikipedia.org/wiki/Thermal_cycler, 2017-05-02.
