Benthic, urchin, and fish observation data collected using multiple methodologies to calculate coral reef carbonate budget estimates for sites in the Mariana Archipelago in 2022 (NCEI Accession 0283896)
- identificationInfo
- distributionInfo
- dataQualityInfo
- dataQualityInfo
- metadataMaintenance
- acquisitionInformation
(MI_Metadata)
fileIdentifier: gov.noaa.nodc:0283896
language:
LanguageCode: eng
characterSet: (MD_CharacterSetCode) utf8
hierarchyLevel: (MD_ScopeCode) dataset
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: ncei.info@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/contact
protocol: HTTPS
name: NOAA Contact Information
description: Information for contacts at NCEI.
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
dateStamp:
DateTime: 2024-08-22T11:20:09Z
metadataStandardName: ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
metadataStandardVersion: ISO 19115-2:2009(E)
return to top
identificationInfo: (MD_DataIdentification)
citation: (CI_Citation)
title: Benthic, urchin, and fish observation data collected using multiple methodologies to calculate coral reef carbonate budget estimates for sites in the Mariana Archipelago in 2022 (NCEI Accession 0283896)
date: (CI_Date)
date: 2023-10-20
dateType: (CI_DateTypeCode) publication
edition: (inapplicable)
identifier: (MD_Identifier)
authority: (CI_Citation)
title: NOAA National Centers for Environmental Information
date: (inapplicable)
code:
Anchor: NCEI Dataset ID gov.noaa.nodc:0283896
identifier: (MD_Identifier)
authority: (CI_Citation)
title: NCEI Archive Management System
date: (inapplicable)
code:
Anchor: NCEI Accession ID 0283896
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: ncei.info@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/contact
protocol: HTTPS
name: NCEI Contact Information
description: Information for contacts at NCEI.
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) publisher
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/person/details/5640 Lori Luers
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: nmfs.pic.credinfo@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.pifsc.noaa.gov/ecosystem_sciences/
protocol: HTTPS
name: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) resourceProvider
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1347 US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center (NMFS/PIFSC)
role: (CI_RoleCode) resourceProvider
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/person/details/5469 Hannah C. Barkley
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: hannah.barkley@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.pifsc.noaa.gov/ecosystem_sciences/
protocol: HTTPS
name: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) principalInvestigator
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/person/details/5640 Lori Luers
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: nmfs.pic.credinfo@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.pifsc.noaa.gov/ecosystem_sciences/
protocol: HTTPS
name: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) pointOfContact
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.pifsc.noaa.gov/ecosystem_sciences/
protocol: HTTPS
name: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.pifsc.noaa.gov/ecosystem_sciences/
protocol: HTTPS
name: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) contributor
presentationForm: (CI_PresentationFormCode) tableDigital
abstract: This data package includes the benthic, urchin, and fish observation data collected for coral reef carbonate budget assessments by the Ecosystem Sciences Division (ESD) of NOAA's Pacific Island Fisheries Science Center (PIFSC) at fixed sites across the Mariana Archipelago in 2022. These data were collected as part of a three-year methods development and pilot project funded by the NOAA Coral Reef Conservation Program (CRCP) in order to establish a standardized carbonate budget methodology for the National Coral Reef Monitoring Program (NCRMP) in the U.S. Pacific Islands. Observational data were collected at the same sites using established Indo-Pacific ReefBudget methodology (Perry et al. 2018), as well as experimental methodologies that leverage existing NCRMP data streams (see the InPort record below for additional details on data collection methodologies). Benthic survey data (genus/species, morphology, and surface distance of corals, crustose coralline algae, macroalgae, and other benthic components) and urchin survey data (genus/species, test size, and abundance of bioeroding urchins) were collected using Indo-Pacific Reef Budget-style transects, "chords" transects located within the 12-m diameter circular footprint covered by NCRMP Structure-from-Motion imagery, and virtual transects in fixed site Structure-from-Motion models. Fish survey data (genus/species, count, and size) were collected using Indo-Pacific ReefBudget belt transects, stationary point count surveys conducted at fixed sites, and averaging stationary point count survey data using stratified random survey design around a set distance of the fixed sites. The raw data in this data package were utilized with referential databases to calculate coral reef carbonate budget estimates for Pacific regions. These databases can be found in the Documentation for this package; the two databases include a calcification rates referential database (developed & customized for the U.S. Pacific Islands region from the Indo-Pacific ReefBudget calcification rates database, accessible on the GitHub repository for this project: https://github.com/hannahbarkley/reefbudgetR/tree/main), as well as a referential database of grazing estimates for herbivorous fishes in Pacific Islands regions (already archived and documented as NCEI Accession 0259399). Other relevant scripts for producing carbonate budget estimates from raw data and referential data are also available on this project's GitHub repository.
purpose: Benthic, urchin, and fish observation data may be used to calculate site-level carbonate production and carbonate erosion rates. Coral reef framework is produced by the growth of corals, crustose coralline algae, and other benthic calcifiers, and persists when rates of carbonate production outpace rates of physical erosion from storms, chemical dissolution, and biological erosion from corallivorous fish, urchins, macrobioeroders, and microbioeroders. The relative rates of gross carbonate production and carbonate erosion and resulting net rate of carbonate production -- the reef's carbonate budget -- thus offer a quantitative metric for assessing coral reef functional status, growth potential, and capacity for maintaining complex habitat. Tracking these metrics becomes increasingly critical under a rapidly changing climate, as ocean warming, ocean acidification, and sea-level rise threaten to reduce rates of coral and crustose coralline algae calcification, accelerate rates of carbonate erosion, and thereby jeopardize the persistence of coral reef habitat. Pilot data collected using various methodologies in 2021 and 2022 were used to establish standard operating procedures for National Coral Reef Monitoring Program (NCRMP) carbonate budget assessments in the U.S. Pacific Islands. The NOAA National Coral Reef Monitoring Program (NCRMP) details a long term approach to provide an ecosystem perspective via monitoring climate, fish, benthic, and socioeconomic variables in a consistent and integrated manner. The NCRMP coordinates various NOAA Coral Reef Conservation Program (CRCP) biological, physical, and human dimensions activities into a cohesive NOAA-wide effort. Through the implementation of the NCRMP, NOAA is able to clearly and concisely communicate results of national-scale monitoring to national, state, and territorial policy makers, resource managers, and the public on a periodic basis. NCRMP is a framework for conducting sustained observations of biological, climate, and socioeconomic indicators at 10 priority coral reefs across the U.S. and its territories. This integrated approach consolidates monitoring of coral reefs under a uniform method in the Pacific, Atlantic, Caribbean, and the Gulf of Mexico for the first time. NCRMP is funded by the Coral Reef Conservation Program (CRCP) and supported by NOAA Fisheries, NOAA National Centers for Coastal Ocean Science (NCCOS), NOAA's Atlantic Oceanographic & Meteorological Laboratory (AOML), NOAA Coral Reef Watch, and many other partners. The Ecosystem Sciences Division (ESD) at NOAA Fisheries is leading in-situ climate monitoring in the U.S. Pacific Islands Region. The climate component of NCRMP in the Pacific provides a comprehensive view of climate change impacts on coral reef ecosystems and helps identify areas of resilience and vulnerability. The key indicators used to identify and monitor climate-driven trends include 1) thermal stress caused by changes in sea temperature, 2) ocean acidification resulting from changes in carbonate chemistry, and 3) ecological impacts by collecting data on coral growth rates, erosion, and community structure to understand the impacts of thermal stress and ocean acidification on the ecosystem. Each year, ESD scientists work closely with CRCP and partners during Reef Assessment and Monitoring Program (RAMP) missions to collect data using moored oceanographic and ecological instruments stationed at fixed sites in the Pacific Ocean, and water samples collected by divers. The in-situ data and satellite-based observations are also used in modeling efforts. Innovative analysis techniques are used to develop products that give fellow scientists, managers, decision makers and the public a better understanding of a region's resources and how they are changing over time.
credit: Related Funding Agency: US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center
credit: Related Funding Agency: US DOC; NOAA; NOS; Coral Reef Conservation Program
status: (MD_ProgressCode) completed
status: (MD_ProgressCode) historicalArchive
pointOfContact: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: ncei.info@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/contact
protocol: HTTPS
name: NCEI Contact Information
description: Information for contacts at NCEI.
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) pointOfContact
resourceMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
graphicOverview: (MD_BrowseGraphic)
fileName: https://www.ncei.noaa.gov/access/metadata/landing-page/bin/gfx?id=gov.noaa.nodc:0283896
fileDescription: Preview graphic
fileType: PNG
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/accession/0283896 0283896
thesaurusName: (CI_Citation)
title: NCEI ACCESSION NUMBER
date: (CI_Date)
date: 2023-09-22
dateType: (CI_DateTypeCode) publication
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/478 BENTHIC COMMUNITIES
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/46 BENTHIC SPECIES
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/93 CORAL
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/95 CORAL - SPECIES IDENTIFICATION
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/523 FISH - CORAL REEF
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/128 FISH CENSUS
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/129 FISH SPECIES
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/476 HABITAT - BENTHIC
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/201 INVERTEBRATE SPECIES
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/522 MACROALGAE
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/215 MACROINVERTEBRATE CENSUS
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/507 REEF AND/OR BOTTOM REGIME - PERCENT COVER
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/339 SPECIES IDENTIFICATION
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/347 SPECIES IDENTIFICATION - ORGANISM LENGTH
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/502 SUBSTRATE DESCRIPTION
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: NODC DATA TYPES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/40 swimmer/diver
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/46 visual observation
type: (MD_KeywordTypeCode) instrument
thesaurusName: (CI_Citation)
title: NODC INSTRUMENT TYPES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/2 biological
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/63 in situ
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/36 survey
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/33 survey - biological
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/34 survey - coral reef
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/7 survey - swimmer/diver
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/32 visual estimate
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/30 visual observation
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: NODC OBSERVATION TYPES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/platform/details/2517 NOAA Ship Rainier
type: (MD_KeywordTypeCode) platform
thesaurusName: (CI_Citation)
title: NODC PLATFORM NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
type: (MD_KeywordTypeCode) dataCentre
thesaurusName: (CI_Citation)
title: NODC COLLECTING INSTITUTION NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1347 US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center
type: (MD_KeywordTypeCode) dataCentre
thesaurusName: (CI_Citation)
title: NODC SUBMITTING INSTITUTION NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/project/details/692 Coral Reef Conservation Program (CRCP)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/project/details/302 CORAL REEF STUDIES
type: (MD_KeywordTypeCode) project
thesaurusName: (CI_Citation)
title: NODC PROJECT NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/seaname/details/93 North Pacific Ocean
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/seaname/details/97 Philippine Sea
type: (MD_KeywordTypeCode) place
thesaurusName: (CI_Citation)
title: NODC SEA AREA NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword: oceanography
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: WMO_CategoryCode
date: (CI_Date)
date: 2012-09-15
dateType: (CI_DateTypeCode) publication
descriptiveKeywords: (MD_Keywords)
keyword: CRED
keyword: CREP
keyword: Coral Reef Ecosystem Division
keyword: Coral Reef Ecosystem Program
keyword: ESD
keyword: Ecosystem Sciences Division
keyword: PIFSC
keyword: Pacific Islands Fisheries Science Center
type: (MD_KeywordTypeCode) dataCentre
thesaurusName: (CI_Citation)
title: Contributing Data Centers
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/85c2a291-71e2-4b51-811b-e469ed6c065c DOC/NOAA/NMFS > National Marine Fisheries Service, NOAA, U.S. Department of Commerce
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/e70ba1f9-0c6a-4a8b-8d67-47cdd08173bf DOC/NOAA/NMFS/PIFSC/ESD > Ecosystem Sciences Division, Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce
type: (MD_KeywordTypeCode) dataCentre
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Data Center Keywords
date: (CI_Date)
date: 2024
dateType: (CI_DateTypeCode) revision
edition: 19
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2024. GCMD Keywords, Version 19. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
descriptiveKeywords: (MD_Keywords)
keyword: 31334
keyword: Developing a carbonate budget assessment methodology for the U.S. Pacific Islands
type: (MD_KeywordTypeCode) project
thesaurusName: (CI_Citation)
title: CRCP Project
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword: Numeric Data Sets > Biology
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: CoRIS Discovery Thesaurus
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword: EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat
keyword: EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat
keyword: EARTH SCIENCE > Biosphere > Microbiota > Blue-green Algae
keyword: EARTH SCIENCE > Biosphere > Vegetation > Algae > Algal Cover
keyword: EARTH SCIENCE > Biosphere > Vegetation > Algae > Calcareous Macroalgae
keyword: EARTH SCIENCE > Biosphere > Vegetation > Algae > Crustose Coralline Algae
keyword: EARTH SCIENCE > Biosphere > Vegetation > Algae > Encrusting Macroalgae
keyword: EARTH SCIENCE > Biosphere > Vegetation > Algae > Fleshy Macroalgae
keyword: EARTH SCIENCE > Biosphere > Vegetation > Algae > Reef Monitoring and Assessment
keyword: EARTH SCIENCE > Biosphere > Vegetation > Algae > Turf Algae
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Coral biodiversity
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect Monitoring > Belt Transect
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect Monitoring > Linear Transect (line)
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect monitoring
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Biological
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Macroinvertebrate Census > Belt Transect
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Macroinvertebrate Density and Species Richness
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Reef Fish Census
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Reef Fish Census > Stationary
keyword: EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs
keyword: EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology
keyword: EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Benthic biology
keyword: EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Coral Cover
keyword: EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Hard Coral Cover
keyword: EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Rugosity
keyword: EARTH SCIENCE > Oceans > Marine Biology > Coral
keyword: EARTH SCIENCE > Oceans > Marine Biology > Coral Communities
keyword: EARTH SCIENCE > Oceans > Marine Biology > Macroinvertebrate Communities
keyword: EARTH SCIENCE > Oceans > Marine Biology > Macroinvertebrates
keyword: EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates
keyword: EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Biodiversity
keyword: EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Census
keyword: EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Macroinvertebrates
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: CoRIS Theme Thesaurus
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/abc6f016-d1f0-4725-b847-639de054d13f EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/ea855d4c-f132-44f9-b31c-447e1101684d EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > FISH
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/e731c2a1-e4b0-42e9-bed9-bd911c9b496c EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > PLANTS > MACROALGAE (SEAWEEDS)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/09a78997-581b-4d1b-ae71-b2b3f96ef719 EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > BENTHIC
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/ad497e7a-48fa-45e1-90a5-b052508bdb30 EARTH SCIENCE > OCEANS > COASTAL PROCESSES > CORAL REEFS
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/dff4d4af-e1e0-4991-884b-a1c088a802b2 EARTH SCIENCE > SOLID EARTH > GEOMORPHIC LANDFORMS/PROCESSES > COASTAL LANDFORMS > CORAL REEFS
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Science Keywords
date: (CI_Date)
date: 2024
dateType: (CI_DateTypeCode) revision
edition: 19
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2024. GCMD Keywords, Version 19. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
descriptiveKeywords: (MD_Keywords)
keyword: Rapid Ecological Assessment (REA)
keyword: Reef and/or Bottom Regime - Surface Area
keyword: ReefBudget
keyword: Rugosity
keyword: Stationary Point Count (SPC)
keyword: Taxon cover
keyword: Transect Percent Cover
keyword: Transect Survey
keyword: carbonate budgets
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: Provider Keywords
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/0982484f-4bb9-41dd-8841-931435cc138d VISUAL OBSERVATIONS > VISUAL OBSERVATIONS
type: (MD_KeywordTypeCode) instrument
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Instrument Keywords
date: (CI_Date)
date: 2024
dateType: (CI_DateTypeCode) revision
edition: 19
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2024. GCMD Keywords, Version 19. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/1bb21d0f-bf48-42b5-8e09-cc0d58407e4a Ships
type: (MD_KeywordTypeCode) platform
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Platform Keywords
date: (CI_Date)
date: 2024
dateType: (CI_DateTypeCode) revision
edition: 19
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2024. GCMD Keywords, Version 19. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://vocab.ices.dk/services/pox/GetCodeDetail/SHIPC/315R RAINIER (call sign: WTEF, ICES code: 315R, 1968)
type: (MD_KeywordTypeCode) platform
thesaurusName: (CI_Citation)
title: ICES/SeaDataNet Ship Codes
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword: small boat
type: (MD_KeywordTypeCode) platform
thesaurusName: (CI_Citation)
title: Provider Platform Names
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword: COUNTRY/TERRITORY > Northern Mariana Islands > Maug > Maug Island (20N145E0001)
keyword: COUNTRY/TERRITORY > Northern Mariana Islands > Northern Mariana Islands > Northern Mariana Islands ( CNMI ) (18N146E0000)
keyword: COUNTRY/TERRITORY > Northern Mariana Islands > Pagan > Pagan Island (18N145E0001)
keyword: COUNTRY/TERRITORY > Northern Mariana Islands > Saipan > Saipan Island (15N145E0002)
keyword: COUNTRY/TERRITORY > United States of America > Guam > Guam (13N144E0000)
keyword: COUNTRY/TERRITORY > United States of America > Guam > Piti Bomb Hole (13N144E0052)
keyword: COUNTRY/TERRITORY > United States of America > Guam > Tumon Bay (13N144E0004)
keyword: OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Guam > Guam (13N144E0000)
keyword: OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Guam > Piti Bomb Hole (13N144E0052)
keyword: OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Guam > Tumon Bay (13N144E0004)
keyword: OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Mariana Archipelago > Northern Mariana Islands ( CNMI ) (18N146E0000)
keyword: OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Maug Island > Maug Island (20N145E0001)
keyword: OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Pagan Island > Pagan Island (18N145E0001)
keyword: OCEAN BASIN > Pacific Ocean > Western Pacific Ocean > Saipan Island > Saipan Island (15N145E0002)
type: (MD_KeywordTypeCode) place
thesaurusName: (CI_Citation)
title: CoRIS Place Thesaurus
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/5488b1cc-08b2-41cf-9bd2-4a2cdd0990de OCEAN > PACIFIC OCEAN > NORTH PACIFIC OCEAN
type: (MD_KeywordTypeCode) place
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Location Keywords
date: (CI_Date)
date: 2024
dateType: (CI_DateTypeCode) revision
edition: 19
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2024. GCMD Keywords, Version 19. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
resourceConstraints: (MD_Constraints)
useLimitation: accessLevel: Public
resourceConstraints: (MD_LegalConstraints)
useConstraints: (MD_RestrictionCode) otherRestrictions
otherConstraints: Cite as: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division (2023). Benthic, urchin, and fish observation data collected using multiple methodologies to calculate coral reef carbonate budget estimates for sites in the Mariana Archipelago in 2022 (NCEI Accession 0283896). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0283896. Accessed [date].
resourceConstraints: (MD_LegalConstraints)
useLimitation: Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
resourceConstraints: (MD_LegalConstraints)
accessConstraints: (MD_RestrictionCode) otherRestrictions
otherConstraints: Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Pacific Islands Fisheries Science Center, 2023: Coral reef carbonate budget data for sites in the Hawaiian Archipelago and Mariana Archipelago derived using multiple methodologies in 2021 and 2022
date: (CI_Date)
date: 2023
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.fisheries.noaa.gov/inport/item/67804
protocol: HTTPS
name: https://www.fisheries.noaa.gov/inport/item/67804
description: InPort Metadata Record
function: (CI_OnLineFunctionCode) information
role: (unknown)
associationType: (DS_AssociationTypeCode) crossReference
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Ecosystem Sciences Division, Pacific Islands Fisheries Science Center (2023). Database of Grazing Metrics of Herbivorous Fishes of the Indo-Pacific (NCEI Accession 0259399). NOAA National Centers for Environmental Information. Dataset. https://doi.org/10.25921/ymn7-0m52.
date: (CI_Date)
date: 2023-09-01
dateType: (CI_DateTypeCode) publication
identifier: (MD_Identifier)
authority: (CI_Citation)
title: International DOI Foundation (IDF)
date: (inapplicable)
code: https://doi.org/10.25921/ymn7-0m52
identifier: (MD_Identifier)
authority: (CI_Citation)
title: NOAA National Centers for Environmental Information
date: (inapplicable)
code: gov.noaa.nodc:0259399
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://doi.org/10.25921/ymn7-0m52
protocol: HTTPS
name: https://doi.org/10.25921/ymn7-0m52
description: NCEI accession containing the referential database for grazing metrics of herbivorous fishes in the U.S. Pacific Islands region
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 Ecosystem Sciences Division, Pacific Islands Fisheries Science Center
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.pifsc.noaa.gov/ecosystem_sciences/
protocol: HTTPS
name: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 US DOC; NOAA; NESDIS; National Centers for Environmental Information (NCEI)
role: (CI_RoleCode) publisher
presentationForm: (CI_PresentationFormCode) tableDigital
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) collection
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Barkley, H. 2023. reefBudgetR Repository. https://github.com/hannahbarkley/reefbudgetR/tree/main
date: (CI_Date)
date: 2023
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://github.com/hannahbarkley/reefbudgetR/tree/main
protocol: HTTPS
name: https://github.com/hannahbarkley/reefbudgetR/tree/main
description: GitHub repository containing the referential database for calcification rates developed for the U.S. Pacific Islands region, and associated carbonate budget R scripts
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Barkley, H
organisationName: US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: hannah.barkley@noaa.gov
role: (CI_RoleCode) author
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) project
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Perry CT, Lange I, Januchowski-Hartley FA (2018) ReefBudget Indo Pacific: online resource and methodology. Retrieved from http://geography.exeter.ac.uk/reefbudget/
date: (CI_Date)
date: 2018
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://geography.exeter.ac.uk/reefbudget/
protocol: HTTP
name: http://geography.exeter.ac.uk/reefbudget/
description: ReefBudget website containing carbonate budget methodologies and resources
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Perry, C.T.
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: c.perry@exeter.ac.uk
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Lange, I.D.
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: i.lange@exeter.ac.uk
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Januchowski-Hartley, F.A.
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.exeter.ac.uk/ University of Exeter
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.exeter.ac.uk/
protocol: HTTPS
name: website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) publisher
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) project
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Coral reef ecosystem program standard operating procedures : data collection for rapid ecological assessment fish surveys
date: (CI_Date)
date: 2015
dateType: (CI_DateTypeCode) publication
identifier: (MD_Identifier)
authority: (CI_Citation)
title: International DOI Foundation (IDF)
date: (inapplicable)
code: https://doi.org/10.7289/v5sn06zt
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://doi.org/10.7289/v5sn06zt
protocol: HTTPS
name: https://doi.org/10.7289/v5sn06zt
description: PIFSC Administrative Report containing the standard operating procedures for rapid ecological assessment fish surveys in the Pacific
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Ayotte, Paula
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: McCoy, Kaylyn
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Heenan, Adel
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Williams, Ivor D. (Ivor Douglas)
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Zamzow, Jill P.
role: (CI_RoleCode) author
presentationForm: (CI_PresentationFormCode) documentDigital
otherCitationDetails: Accession Number noaa:9061
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) userGuide
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Rodriguez, Caroline; Amir, Corinne; Gray, Andrew; Asbury, Mollie; Suka, Rhonda; Lamirand, Mia; Couch, Courtney S.; Oliver, Thomas. Extracting Coral Vital Rate Estimates at Fixed Sites Using Structure-from-Motion Standard Operating Procedures; Measuring Coral Vital Rates Using Structure-from-Motion Photogrammetry at Fixed Sites: Standard Operating Procedures and Error Estimates. NOAA technical memorandum NMFS PIFSC; 120. 2021. https://doi.org/10.25923/a9se-k649
date: (CI_Date)
date: 2021
dateType: (CI_DateTypeCode) publication
identifier: (MD_Identifier)
code: noaa:32739
identifier: (MD_Identifier)
authority: (CI_Citation)
title: International DOI Foundation (IDF)
date: (inapplicable)
code: https://doi.org/10.25923/a9se-k649
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://doi.org/10.25923/a9se-k649
protocol: HTTPS
name: https://doi.org/10.25923/a9se-k649
description: NOAA Technical Memorandum containing the standard operating procedures for measuring coral vital rates using Structure-from-Motion photogrammetry
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Rodriguez, Caroline
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Amir, Corinne
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Gray, Andrew
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Asbury, Mollie
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Suka, Rhonda
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Lamirand, Mia
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Couch, Courtney S.
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Oliver, Thomas
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Pacific Islands Fisheries Science Center (U.S.)
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1670 US DOC; NOAA; OAR; OSS; NOAA Central Library
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: library.reference@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://library.noaa.gov/
protocol: HTTPS
name: NOAA Central Library website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) publisher
series: (CI_Series)
name: NOAA technical memorandum NMFS PIFSC ; 120
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) userGuide
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Ecosystem Sciences Division, Pacific Islands Fisheries Science Center (2023). Database of Grazing Metrics of Herbivorous Fishes of the Indo-Pacific (NCEI Accession 0259399). NOAA National Centers for Environmental Information. Dataset. https://doi.org/10.25921/ymn7-0m52.
date: (CI_Date)
date: 2023-09-01
dateType: (CI_DateTypeCode) publication
identifier: (MD_Identifier)
authority: (CI_Citation)
title: International DOI Foundation (IDF)
date: (inapplicable)
code: https://doi.org/10.25921/ymn7-0m52
identifier: (MD_Identifier)
authority: (CI_Citation)
title: NOAA National Centers for Environmental Information
date: (inapplicable)
code: gov.noaa.nodc:0259399
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://doi.org/10.25921/ymn7-0m52
protocol: HTTPS
name: https://doi.org/10.25921/ymn7-0m52
description: Related data
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1866 Ecosystem Sciences Division, Pacific Islands Fisheries Science Center
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.pifsc.noaa.gov/ecosystem_sciences/
protocol: HTTPS
name: NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 US DOC; NOAA; NESDIS; National Centers for Environmental Information (NCEI)
role: (CI_RoleCode) publisher
presentationForm: (CI_PresentationFormCode) tableDigital
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) collection
language:
LanguageCode: eng; USA
characterSet: (MD_CharacterSetCode) utf8
topicCategory: (MD_TopicCategoryCode) environment
topicCategory: (MD_TopicCategoryCode) oceans
topicCategory: (MD_TopicCategoryCode) biota
extent: (EX_Extent)
geographicElement: (EX_GeographicBoundingBox)
westBoundLongitude: 144.637741
eastBoundLongitude: 145.812292
southBoundLatitude: 13.232681
northBoundLatitude: 20.036568
temporalElement: (EX_TemporalExtent)
extent:
TimePeriod:
beginPosition: 2022-04-12
endPosition: 2022-08-10
supplementalInformation: Submission Package ID: LAG2E3 This archive package contains the raw data that was used as part of a larger study comparing multiple methodologies to determine the best method for calculating carbonate budget estimates in the Pacific, and to establish Standard Operating Practices for future NOAA National Coral Reef Monitoring Program carbonate budget surveys in the Pacific.
return to top
distributionInfo: (MD_Distribution)
distributor: (MD_Distributor)
distributorContact: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
phone: (CI_Telephone)
voice: +1-301-713-3277
address: (CI_Address)
electronicMailAddress: NCEI.Info@noaa.gov
role: (CI_RoleCode) pointOfContact
distributionOrderProcess: (MD_StandardOrderProcess)
fees: In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
orderingInstructions: Contact NCEI for other distribution options and instructions.
distributorFormat: (MD_Format)
name: CSV
version: (unknown)
distributorTransferOptions: (MD_DigitalTransferOptions)
transferSize:
Real: 14.308
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0283896
protocol: HTTPS
applicationProfile: Web browser
name: NCEI Dataset Landing Page
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/oas/283896
protocol: HTTPS
applicationProfile: Web browser
name: Descriptive Information
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/download/283896
protocol: HTTPS
applicationProfile: Web browser
name: HTTPS
description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0219/0283896/
protocol: FTP
applicationProfile: Any FTP client
name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
return to top
dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NCEI Accession 0283896 v1.1 was published.
dateTime:
DateTime: 2023-10-20T16:02:38Z
output: (LE_Source)
sourceCitation: (CI_Citation)
title: NCEI Accession 0283896 v1.1
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0283896/1.1
protocol: HTTPS
name: NCEI Accession 0283896 v1.1
description: published 2023-10-20T16:02:38Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
return to top
dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: Parameter or Variable: SPECIES IDENTIFICATION (measured); Units: unitless; Observation Category: in situ; Sampling Instrument: swimmer/diver; Sampling and Analyzing Method: Benthic Indo-Pacific ReefBudget: Following Indo-Pacific ReefBudget methodology, benthic survey data were collected by divers along six 10-m transects per site. Transects were laid out in two parallel rows of three -- where the middle transects in each row were overlaid on the inshore and offshore 10-m edges of the fixed site box -- with 5-m spacing between adjacent transects. Along each transect, the surface cover (cm) of every benthic component located directly beneath the transect tape was measured with a flexible measuring tape. Data were collected on the following benthic components: hard coral (identified to genus/species and morphology), crustose coralline algae (CCA), macroalgae, turf, sand, carbonate hard substrate, non-carbonate hard substrate, or other (including cyanobacteria, soft coral, seagrass, sponges, zoanthids, corallimorphs, or other invertebrates). The surface cover of coral colonies with open branching morphologies (e.g. Acropora intermedia, Pocillopora grandis) was estimated by multiplying the total number of branches directly beneath the transect tape by the average branch diameter, and empty space between and beneath the live branches was considered to be turf. This approach minimizes potential over-estimation of live coral cover that can occur when draping the tape over an entire branching colony (where void space is included in the surface cover measurement). Surface cover of colonies with closed branching morphologies (e.g. Acropora humilis, Pocillopora damicornis; where void space between branches is minimal and all substrate beneath the transect tape is coral skeleton) was measured by draping the tape over the entire colony. Benthic Chords: Divers collected in-water benthic data along the same set of transects that were later surveyed virtually using SfM. To ensure that transects fell within the 12-m SfM circular footprint, a master transect tape was first established along the inshore, 10-m edge of the fixed site box. Six 8-m to 10-m perpendicular transects (2 x 8 m, 2 x 9 m, and 2 x 10 m) were then laid out at predetermined distances along the master transect tape with 1.5-m spacing between transects (shorter transects closer to the edges, longer transects towards the center of the circle). Benthic data were collected along the six perpendicular transects according to the Indo-Pacific ReefBudget methodology outlined above. Yellow dive weights were placed on the benthos at the beginning and end of each diver-completed transect; these weights were included in subsequent SfM imagery collection to mark the locations of diver-collected transects. Urchin Indo-Pacific ReefBudget: Urchin surveys were conducted over a 1 m-wide belt along the same transects used for Indo-Pacific ReefBudget benthic surveys. Along each transect, divers recorded the number and test size (size of the urchin shell excluding spines) for the following genera/species: Echinostrephus spp., Echinothrix spp., Diadema spp., Echinometra spp. (including Echinometra mathaei), and Parasalenia spp.. Test sizes were measured with a scale bar on the side of the dive slates and binned into 20 mm size classes: 0-20 mm, 21-40 mm, 41-60 mm, 61-80 mm, 81-100 mm, 101-120 mm, 121-140 mm, and 141-160 mm. Urchin Chords: urchin surveys (1 m x 8-10 m belt transects) were conducted along the same chords transects surveyed for the benthic methodology following the Indo-Pacific ReefBudget procedure. Fish Belt surveys: The belt method is used to conduct reef fish surveys around the Hawaiian Archipelago and the Marianas Archipelago as part of the carbonate budget pilot study. Fish are counted and sized (total length in centimeters, binned into 10cm size classes) along a 5 x 30 m transect area at ten different locations within 30m of a fixed site previously established by ESD's Ocean and Climate Change team. The belt method catalogs the density (abundance per hectare), biomass (kg per hectare), and bioerosion (kilograms per meters squared per year) of diurnally active reef fish assemblages in shallow-water (average 15m) hard-bottom habitats. Bioerosion metrics are calculated using foraging metrics that have been derived from literature where Pacific fish species were prioritized. These three values include: 1) proportion of bites leaving scars, 2) bite rates (bites per minute), and 3) volume removed per bite (centimeters cubed). Fish Stationary Point Count surveys: The stationary point count (SPC) method is used to conduct reef fish surveys as part of the NOAA National Coral Reef Monitoring Program (NCRMP). The SPC method catalogs the diversity (species richness), abundance (numeric density) and biomass (fish mass per unit area) of diurnally active reef fish assemblages in shallow-water (less than 30 m) hard-bottom habitats. This study uses two complimentary sampling designs to survey the coral reef ecosystems at and around selected fixed-sites: 1) A stratified random sampling (StRS) design and 2) a fixed-site (fixed SPC) sampling design. The StRS survey domain encompasses the majority of the mapped area of reef and hard bottom habitats within 12.5 km of permanent fixed-sites previously established by ESD's Ocean and Climate Change team. The stratification includes island, reef zone, depth, and habitat structure type. Sampling effort is anywhere between 16 to 55 StRS SPC sites within 12.5 kilometers of each fixed-site, excluding the fixed SPC data.; Data Quality Method: The same methods of data collection are used at each surveyed site. Observations at each site were made by divers who have been trained, and met minimum standards in identifying species present at the survey locations and in estimating size of benthic, urchin, and fish. All species identifications are made visually. Observations, including species identification and sizing, are periodically checked during expeditions for consistency between divers (diver bias) or other discrepancies. Data entry is usually conducted on the same day as the surveys using a data entry interface with several data controls employed, and are quality controlled by the divers using a two-person system. Following a mission, the data is then run through rigorous quality control checks by the data management team before the data are migrated to the Oracle database. Given the size of the data set, there remains some possibility of typographical or other errors..
processStep: (LE_ProcessStep)
description: Parameter or Variable: SPECIES IDENTIFICATION - ORGANISM LENGTH (measured); Units: centimeter; Observation Category: in situ; Sampling Instrument: swimmer/diver; Sampling and Analyzing Method: Urchin Indo-Pacific ReefBudget: Urchin surveys were conducted over a 1 m-wide belt along the same transects used for Indo-Pacific ReefBudget benthic surveys. Along each transect, divers recorded the number and test size (size of the urchin shell excluding spines) for the following genera/species: Echinostrephus spp., Echinothrix spp., Diadema spp., Echinometra spp. (including Echinometra mathaei), and Parasalenia spp.. Test sizes were measured with a scale bar on the side of the dive slates and binned into 20 mm size classes: 0-20 mm, 21-40 mm, 41-60 mm, 61-80 mm, 81-100 mm, 101-120 mm, 121-140 mm, and 141-160 mm. Urchin Chords: urchin surveys (1 m x 8-10 m belt transects) were conducted along the same chords transects surveyed for the benthic methodology following the Indo-Pacific ReefBudget procedure. Fish Belt surveys: The belt method is used to conduct reef fish surveys around the Hawaiian Archipelago and the Marianas Archipelago as part of the carbonate budget pilot study. Fish are counted and sized (total length in centimeters, binned into 10cm size classes) along a 5 x 30 m transect area at ten different locations within 30m of a fixed site previously established by ESD's Ocean and Climate Change team. The belt method catalogs the density (abundance per hectare), biomass (kg per hectare), and bioerosion (kilograms per meters squared per year) of diurnally active reef fish assemblages in shallow-water (average 15m) hard-bottom habitats. Bioerosion metrics are calculated using foraging metrics that have been derived from literature where Pacific fish species were prioritized. These three values include: 1) proportion of bites leaving scars, 2) bite rates (bites per minute), and 3) volume removed per bite (centimeters cubed). Fish Stationary Point Count surveys: The stationary point count (SPC) method is used to conduct reef fish surveys as part of the NOAA National Coral Reef Monitoring Program (NCRMP). The SPC method catalogs the diversity (species richness), abundance (numeric density) and biomass (fish mass per unit area) of diurnally active reef fish assemblages in shallow-water (less than 30 m) hard-bottom habitats. This study uses two complimentary sampling designs to survey the coral reef ecosystems at and around selected fixed-sites: 1) A stratified random sampling (StRS) design and 2) a fixed-site (fixed SPC) sampling design. The StRS survey domain encompasses the majority of the mapped area of reef and hard bottom habitats within 12.5 km of permanent fixed-sites previously established by ESD's Ocean and Climate Change team. The stratification includes island, reef zone, depth, and habitat structure type. Sampling effort is anywhere between 16 to 55 StRS SPC sites within 12.5 kilometers of each fixed-site, excluding the fixed SPC data.; Data Quality Method: The same methods of data collection are used at each surveyed site. Observations at each site were made by divers who have been trained, and met minimum standards in identifying species present at the survey locations and in estimating size of urchin and fish. All species identifications are made visually. Observations, including species identification and sizing, are periodically checked during expeditions for consistency between divers (diver bias) or other discrepancies. Data entry is usually conducted on the same day as the surveys using a data entry interface with several data controls employed, and are quality controlled by the divers using a two-person system. Following a mission, the data is then run through rigorous quality control checks by the data management team before the data are migrated to the Oracle database. Given the size of the data set, there remains some possibility of typographical or other errors..
processStep: (LE_ProcessStep)
description: Parameter or Variable: REEF AND/OR BOTTOM REGIME - PERCENT COVER (measured); Units: percent; Observation Category: in situ; Sampling Instrument: swimmer/diver; Sampling and Analyzing Method: Fish Stationary Point Count surveys: On completing the fish count, divers make rapid visual estimates of benthic cover and structural complexity of the substrate within their survey cylinder. Benthic cover is estimated for broad functional groups (e.g., hard coral, sand, macroalgae). Structural complexity is determined by estimating the amount of the cylinder within 5 substrate-height bins (<20 cm, 20-50 cm; 50-100 cm; 100-150 cm, and >150 cm).; Data Quality Method: Visual estimates of benthic cover are useful as broad indication of the reef benthic assemblages present at each survey site, but there is considerable scope for error in rapid diver estimates of this kind..
processStep: (LE_ProcessStep)
description: Parameter or Variable: MACROINVERTEBRATE CENSUS (measured); Units: unitless; Observation Category: in situ; Sampling Instrument: swimmer/diver; Sampling and Analyzing Method: Urchin Indo-Pacific ReefBudget: Urchin surveys were conducted over a 1 m-wide belt along the same transects used for Indo-Pacific ReefBudget benthic surveys. Along each transect, divers recorded the number and test size (size of the urchin shell excluding spines) for the following genera/species: Echinostrephus spp., Echinothrix spp., Diadema spp., Echinometra spp. (including Echinometra mathaei), and Parasalenia spp.. Test sizes were measured with a scale bar on the side of the dive slates and binned into 20 mm size classes: 0-20 mm, 21-40 mm, 41-60 mm, 61-80 mm, 81-100 mm, 101-120 mm, 121-140 mm, and 141-160 mm. Urchin Chords: urchin surveys (1 m x 8-10 m belt transects) were conducted along the same chords transects surveyed for the benthic methodology following the Indo-Pacific ReefBudget procedure. Fish Stationary Point Count Surveys: Urchin and boring urchin categorized as dominant (D), abundant (A), common (C), occasional (O), or rare (R); Data Quality Method: The same methods of data collection are used at each surveyed site. Observations at each site were made by divers who have been trained, and met minimum standards in identifying species present at the survey locations and in estimating size of urchins. All species identifications are made visually. Observations, including species identification and sizing, are periodically checked during expeditions for consistency between divers (diver bias) or other discrepancies. Data entry is usually conducted on the same day as the surveys using a data entry interface with several data controls employed, and are quality controlled by the divers using a two-person system. Following a mission, the data is then run through rigorous quality control checks by the data management team before the data are migrated to the Oracle database. Given the size of the data set, there remains some possibility of typographical or other errors..
processStep: (LE_ProcessStep)
description: Parameter or Variable: REEF AND/OR BOTTOM REGIME - SURFACE AREA (measured); Units: centimeter; Observation Category: in situ; Sampling Instrument: swimmer/diver; Sampling and Analyzing Method: Benthic Indo-Pacific ReefBudget: Following Indo-Pacific ReefBudget methodology, benthic survey data were collected by divers along six 10-m transects per site. Transects were laid out in two parallel rows of three -- where the middle transects in each row were overlaid on the inshore and offshore 10-m edges of the fixed site box -- with 5-m spacing between adjacent transects. Along each transect, the surface cover (cm) of every benthic component located directly beneath the transect tape was measured with a flexible measuring tape. Data were collected on the following benthic components: hard coral (identified to genus/species and morphology), crustose coralline algae (CCA), macroalgae, turf, sand, carbonate hard substrate, non-carbonate hard substrate, or other (including cyanobacteria, soft coral, seagrass, sponges, zoanthids, corallimorphs, or other invertebrates). The surface cover of coral colonies with open branching morphologies (e.g. Acropora intermedia, Pocillopora grandis) was estimated by multiplying the total number of branches directly beneath the transect tape by the average branch diameter, and empty space between and beneath the live branches was considered to be turf. This approach minimizes potential over-estimation of live coral cover that can occur when draping the tape over an entire branching colony (where void space is included in the surface cover measurement). Surface cover of colonies with closed branching morphologies (e.g. Acropora humilis, Pocillopora damicornis; where void space between branches is minimal and all substrate beneath the transect tape is coral skeleton) was measured by draping the tape over the entire colony. Benthic Chords: Divers collected in-water benthic data along the same set of transects that were later surveyed virtually using SfM. To ensure that transects fell within the 12-m SfM circular footprint, a master transect tape was first established along the inshore, 10-m edge of the fixed site box. Six 8-m to 10-m perpendicular transects (2 x 8 m, 2 x 9 m, and 2 x 10 m) were then laid out at predetermined distances along the master transect tape with 1.5-m spacing between transects (shorter transects closer to the edges, longer transects towards the center of the circle). Benthic data were collected along the six perpendicular transects according to the Indo-Pacific ReefBudget methodology outlined above. Yellow dive weights were placed on the benthos at the beginning and end of each diver-completed transect; these weights were included in subsequent SfM imagery collection to mark the locations of diver-collected transects.; Data Quality Method: The same methods of data collection are used at each surveyed site. Observations at each site were made by divers who have been trained, and met minimum standards in identifying species present at the survey locations and in estimating size of benthic organisms. All species identifications are made visually. Observations, including species identification and sizing, are periodically checked during expeditions for consistency between divers (diver bias) or other discrepancies. Data entry is usually conducted on the same day as the surveys using a data entry interface with several data controls employed, and are quality controlled by the divers using a two-person system. Following a mission, the data is then run through rigorous quality control checks by the data management team before the data are migrated to the Oracle database. Given the size of the data set, there remains some possibility of typographical or other errors..
processStep: (LE_ProcessStep)
description: Parameter or Variable: SPECIES IDENTIFICATION (measured); Units: unitless; Observation Category: laboratory analysis; Sampling Instrument: visual observation; Sampling and Analyzing Method: Structure-from-Motion: Benthic data collection makes use of fixed-site SfM imagery already collected as part of NCRMP monitoring efforts. Imagery was collected at each site following NCRMP standard operating procedures (Rodriguez et al. 2021). The images were processed with Agisoft Metashape photogrammetry software to produce a scaled digital elevation model (DEM) and corresponding orthomosaic for each site. Benthic data were extracted from these two high resolution reef models in ArcGIS Pro 3.0.3 using a customized tool that replicates in-water benthic data collection in the SfM environment. Structure-from-Motion: Extraction of urchin data from SfM imagery was conducted for Oahu sites using ArcGIS Pro and NOAA Video and Image Analytics for Marine Environments (VIAME) software. In ArcGIS Pro, virtual benthic transects laid in each fixed-site orthomosaic were cropped to the extent of the belt transect survey area (1 m x 8-10 m) and exported as individual jpeg images for each transect. Belt transect images were then uploaded to VIAME, and all visible urchins in were identified to genus/species and sized with a bounding box. The total length of each urchin (length of the test plus spines) was estimated to be the largest dimension of the bounding box..
processStep: (LE_ProcessStep)
description: Parameter or Variable: SPECIES IDENTIFICATION - ORGANISM LENGTH (measured); Units: centimeter; Observation Category: laboratory analysis; Sampling Instrument: visual observation; Sampling and Analyzing Method: Urchin Structure-from-Motion: Extraction of urchin data from SfM imagery was conducted for Oahu sites using ArcGIS Pro and NOAA Video and Image Analytics for Marine Environments (VIAME) software. In ArcGIS Pro, virtual benthic transects laid in each fixed-site orthomosaic were cropped to the extent of the belt transect survey area (1 m x 8-10 m) and exported as individual jpeg images for each transect. Belt transect images were then uploaded to VIAME, and all visible urchins in were identified to genus/species and sized with a bounding box. The total length of each urchin (length of the test plus spines) was estimated to be the largest dimension of the bounding box..
processStep: (LE_ProcessStep)
description: Parameter or Variable: REEF AND/OR BOTTOM REGIME - SURFACE AREA (measured); Units: centimeter; Observation Category: laboratory analysis; Sampling Instrument: visual observation; Sampling and Analyzing Method: Structure-from-Motion: Benthic data collection makes use of fixed-site SfM imagery already collected as part of NCRMP monitoring efforts. Imagery was collected at each site following NCRMP standard operating procedures (Rodriguez et al. 2021). The images were processed with Agisoft Metashape photogrammetry software to produce a scaled digital elevation model (DEM) and corresponding orthomosaic for each site. Benthic data were extracted from these two high resolution reef models in ArcGIS Pro 3.0.3 using a customized tool that replicates in-water benthic data collection in the SfM environment..
return to top
metadataMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
maintenanceNote: Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
role: (CI_RoleCode) custodian
return to top
acquisitionInformation: (MI_AcquisitionInformation)
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: swimmer/diver
type: swimmer/diver
description: not an instrument - use as observation type
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: visual observation
type: visual observation
description: not an instrument - maybe an observation type
platform: (MI_Platform)
identifier: (MD_Identifier)
code: NOAA Ship Rainier
description: Title: NOAA Ship Flag: United States of America Vessel Type: Research Vessel (Hydrographic) DOB: Apr 1968 IMO: 6711003 Hull Classification: S 221
instrument: (missing)