Accession numbers for metagenome-assembled genomes (MAGs) from samples collected in 2018 on R/V Thompson cruise TN350 at the Upper and Lower Cones, Upper Caldera Wall and NW Caldera, Brothers Volcano (NCEI Accession 0278511)
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title: Accession numbers for metagenome-assembled genomes (MAGs) from samples collected in 2018 on R/V Thompson cruise TN350 at the Upper and Lower Cones, Upper Caldera Wall and NW Caldera, Brothers Volcano (NCEI Accession 0278511)
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abstract: This dataset contains biological data collected on R/V Thomas G. Thompson during cruise TN350 in the South Pacific Ocean from 2018-03-01 to 2018-03-31. These data include depth and taxon. The instruments used to collect these data include Automated DNA Sequencer. These data were collected by Anna-Louise Reysenbach of Portland State University and Susan Humphris of Woods Hole Oceanographic Institution as part of the "Collaborative Research: Hydrothermal and Microbiological Investigations of the Active Brothers Volcano in the Kermadec Arc (Brothers Volcano Microbiology)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2022-08-24. The following is the text of the dataset description provided by BCO-DMO: Brothers Volcano Metagenome-Assembled Genome Accession Numbers Dataset Description: Acquisition Description: Water samples and hydrothermal vent deposits were collected as described in Reysenbach & St. John et al., 2020. Samples were collected with remotely operated vehicle ROV Jason. Water samples were obtained using major water samplers. Hydrothermal deposits were placed in sealed bioboxes in the ROV sampling basket to restrict flushing of samples by surrounding seawater during the ascent. Once shipboard, 1L of water samples were filtered through a 0.2-μm Sterivex filter (Merck). For the hydrothermal deposits, the outer few millimeters (up to approximately 5 mm) was subsampled for DNA extraction. These exterior samples were homogenized and stored in cryovials at -80 degrees C for subsequent DNA extraction. For the water samples, the DNA was extracted from the sterivex filters as previously described by R. E. Anderson et al. (2017). The DNA was extracted from the homogenized hydrothermal depot samples using the DNeasy PowerSoil kit (Qiagen) All purified environmental DNA was stored at -80 degrees C. After DNA extraction and library preparation, metagenomes were sequenced using the Illumina HiSeq 3000.
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title: International DOI Foundation (IDF)
date: (inapplicable)
code: https://doi.org/10.26008/1912/bco-dmo.868323.1
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://doi.org/10.26008/1912/bco-dmo.868323.1
protocol: HTTPS
name: https://doi.org/10.26008/1912/bco-dmo.868323.1
description: originator dataset
function: (CI_OnLineFunctionCode) download
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: http://lod.bco-dmo.org/id/person/51685 Anna-Louise Reysenbach
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1399 Portland State University (PSU)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://lod.bco-dmo.org/id/person/51685
protocol: HTTP
name: Portland State University website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) principalInvestigator
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: http://lod.bco-dmo.org/id/person/778739 Susan Humphris
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/742 Woods Hole Oceanographic Institution (WHOI)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://lod.bco-dmo.org/id/person/778739
protocol: HTTP
name: Woods Hole Oceanographic Institution website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) principalInvestigator
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: http://lod.bco-dmo.org/id/affiliation/191 Biological and Chemical Oceanography Data Management Office (BCO-DMO)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://lod.bco-dmo.org/id/affiliation/191
protocol: HTTP
name: website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) pointOfContact
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: http://lod.bco-dmo.org/id/person/51685 Reysenbach, Anna-Louise
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1399 Portland State University
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://lod.bco-dmo.org/id/person/51685
protocol: HTTP
name: Portland State University website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: http://lod.bco-dmo.org/id/person/778739 Humphris, Susan
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/742 Woods Hole Oceanographic Institution
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://lod.bco-dmo.org/id/person/778739
protocol: HTTP
name: Woods Hole Oceanographic Institution website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1416 Biological and Chemical Oceanography Data Management Office (BCO-DMO)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://bcodmo.org
protocol: HTTP
name: Biological and Chemical Oceanography Data Management Office website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) publisher
presentationForm: (CI_PresentationFormCode) tableDigital
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) collection
language:
LanguageCode: eng; USA
characterSet: (MD_CharacterSetCode) utf8
topicCategory: (MD_TopicCategoryCode) environment
topicCategory: (MD_TopicCategoryCode) oceans
topicCategory: (MD_TopicCategoryCode) biota
extent: (EX_Extent)
geographicElement: (EX_GeographicBoundingBox)
westBoundLongitude: 179.052
eastBoundLongitude: 179.071
southBoundLatitude: -34.882
northBoundLatitude: -34.858
temporalElement: (EX_TemporalExtent)
extent:
TimePeriod:
beginPosition: 2018-03-01
endPosition: 2018-03-31
supplementalInformation: (missing)
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distributionInfo: (MD_Distribution)
distributor: (MD_Distributor)
distributorContact: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
phone: (CI_Telephone)
voice: +1-301-713-3277
address: (CI_Address)
electronicMailAddress: NCEI.Info@noaa.gov
role: (CI_RoleCode) pointOfContact
distributionOrderProcess: (MD_StandardOrderProcess)
fees: In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
orderingInstructions: Contact NCEI for other distribution options and instructions.
distributorFormat: (MD_Format)
name: TSV
version: (unknown)
distributorTransferOptions: (MD_DigitalTransferOptions)
transferSize:
Real: 0.428
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0278511
protocol: HTTPS
applicationProfile: Web browser
name: NCEI Dataset Landing Page
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/oas/278511
protocol: HTTPS
applicationProfile: Web browser
name: Descriptive Information
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/download/278511
protocol: HTTPS
applicationProfile: Web browser
name: HTTPS
description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0212/0278511/
protocol: FTP
applicationProfile: Any FTP client
name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NCEI Accession 0278511 v1.1 was published.
dateTime:
DateTime: 2023-05-20T05:07:16Z
output: (LE_Source)
sourceCitation: (CI_Citation)
title: NCEI Accession 0278511 v1.1
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0278511/1.1
protocol: HTTPS
name: NCEI Accession 0278511 v1.1
description: published 2023-05-20T05:07:16Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
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metadataMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
maintenanceNote: Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
role: (CI_RoleCode) custodian
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acquisitionInformation: (MI_AcquisitionInformation)
platform: (MI_Platform)
identifier: (MD_Identifier)
code: R/V THOMAS G. THOMPSON
description: Use this platform for data attributed to R/V Thomas G. Thompson that were collected between July 1991 and present. R/V Thomas G. Thompson (AGOR-23) Owned by US Navy, leased to University of Washington. Active dates: July 1991 (Source: http://www.navsource.org/archives/09/57/5723.htm, last accessed on 20 Dec 2011)
instrument: (missing)
