Abundance and biomass of ciliates from inverted microscope counts from samples taken on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-2012 (Trophic BATS project) (NCEI Accession 0278349)
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title: Abundance and biomass of ciliates from inverted microscope counts from samples taken on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-2012 (Trophic BATS project) (NCEI Accession 0278349)
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abstract: This dataset contains biological, chemical, physical, and survey - biological data collected on R/V Atlantic Explorer during cruises AE1102, AE1118, AE1206, and AE1219 in the North Atlantic Ocean from 2011-02-23 to 2012-07-31. These data include abundance, biomass carbon, depth, and taxon. The instruments used to collect these data include Inverted Microscope and Niskin bottle. These data were collected by Susanne Neuer of Arizona State University as part of the "Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea (Trophic BATS)" project and "Ocean Carbon and Biogeochemistry (OCB)" program. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2019-08-06. The following is the text of the dataset description provided by BCO-DMO: Abundance and biomass of ciliates in the Sargasso Sea from inverted microscope counts. Dataset Description: Abundance (cells per L) and biomass (ng C per L) of ciliates from samples collected during four cruises in the Sargasso Sea during spring and summer 2011-2012. Plot of total_biomass vs. depth. (Generated by BCO-DMO.) Click the image to view a larger version.
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otherConstraints: Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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Anchor: CC-BY-4.0 This dataset is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) License.
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Anchor: CC-BY-4.0 SPDX License: Creative Commons Attribution 4.0 International (CC-BY-4.0)
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title: Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
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title: Neuer, S. (2013) Abundance and biomass of ciliates from inverted microscope counts from samples taken on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-2012 (Trophic BATS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2013-08-22. https://doi.org/10.1575/1912/bco-dmo.4018.1
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date: 2013-08-22
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code: https://doi.org/10.1575/1912/bco-dmo.4018.1
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Anchor: http://lod.bco-dmo.org/id/person/51336 Susanne Neuer
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topicCategory: (MD_TopicCategoryCode) oceans
topicCategory: (MD_TopicCategoryCode) biota
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beginPosition: 2011-02-23
endPosition: 2012-07-31
supplementalInformation: Acquisition Description: Water Column Sampling: Water column sampling was performed on four cruises during the spring and the summer of 2011 and 2012 at the Bermuda Atlantic Time-series Study station (31’40°N 64’10°W, BATS) and in the mesoscale eddies found in the surrounding area of the Sargasso Sea. For each cruise, 2 stations were sampled, usually in the center of a mesoscale eddy and at BATS. The edge of the eddy was sample two times, as well. To be able to get a better reproducibility of data, each experiment was replicated. For each experiment, seawater samples were collected pre-dawn (on deck 2:30-4:00, local time) at four different depths within the euphotic zone (20m, 50m, 80m and the Deep Chlorophyll Maximum, DCM). Twenty-one 10L Niskin bottles were attached to a rosette with conductivity, temperature, depth sensors (CTD), and an in vivo fluorometer. This sensor allowed for recording in real time of chlorophyll fluorescence and the DCM for each station. The water that was collected from the 10L Niskin bottles was sampled for abundance and biomass of the plankton community. Microscopy Analyses: Inverted microscopy was used to determine abundance and biomass of planktonic ciliates. Seawater was collected into 200ml amber glass bottles which had previously been supplied with 2.5% of Lugol’s dye (v/v). Samples were stored in the dark and at room temperature onboard ship and in the laboratory at ASU. 100 ml of sample were settled onto settling chambers for 48hr according to the Utermöhl method (Utermöhl, 1931). A Nikon Elipse TE300 inverted microscope was used at 40x magnification to count the entire slide and all the ciliates found were measured and classified based on the classification system introduced by Agatha (2004) and Agatha & Struder-Kypke (2007). Ciliates were classified into 4 standard shapes: prolate spheroid, sphere, cone, cone + half sphere. Biomass calculations were done for each category of organism counted. Biovolume for each group was determined based on size and shape of the organism by approximating the closest geometric shape (Hillebrand et al. 1999) and then converted into units of carbon based on the carbon to volume ratio (Menden-Deuer and Lessard 2000). To determine the carbon biomass of the ciliates, carbon to volume conversion factors were used, as in Putt and Stoecker (1989). The 95% confidence intervals were calculated according to Lund et al. (1958).
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Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
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fees: In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
orderingInstructions: Contact NCEI for other distribution options and instructions.
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description: NCEI Accession 0278349 v1.1 was published.
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DateTime: 2023-05-17T13:00:31Z
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acquisitionInformation: (MI_AcquisitionInformation)
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description: instrument is used in lab analyses A microscope is an instrument used to see objects that are too small for the naked eye.
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description: Device for obtaining samples of seawater at a specific depth Why special entry for Niskin bottle but no entry for Nansen bottle?
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code: RV Atlantic Explorer
description: Updated information from ICES for for the vessel Atlantic Explorer from UNITED STATES. Code : 33H4 Name : Atlantic Explorer Flag : UNITED STATES - US (ISO Country Code) Call Sign : WDC9417 Title : RV Platform Class : 31 Research vessel IMO : 8120014 Commissioned Date : 2005-10 Current Length : 51 Built : 1982 Previous Name (Notes): Seward Johnson II Notes : Bermuda Biological Station, Bermuda Institute of Ocean Sciences (BIOS) since 2005-10. Built as Trojan then renamed Edwin Link and Seward Johnson II. Active as at 2007-07. Lloyds URL : http://www.lloydsmiu.com/lmiu/vessels/overview.htm?vesselID=303109 Additional Information Sources: - http://www.marinetraffic.com/ais/shipdetails.aspx?MMSI=303591000 Same Vessels Info: 33EL - EDWIN LINK 33S2 - SEWARD JOHNSON II General Comments: Call sign: WDC9417 - information from ship captain. Clarified faulty info from the following: Oceanic=WST4798, Lloyds = WDC8916 , ITU = WDC9417
instrument: (missing)