Skip to main content
Dataset Overview | National Centers for Environmental Information (NCEI)

Pteropod shell dissolution in natural and high-CO2 environments from samples collected on RRS James Clark Ross cruise JR177 in the Scotia Sea, Southern Ocean from 2007-2008 (NCEI Accession 0278115)

browse graphicGraphic not available.
This dataset contains biological, chemical, physical, and survey - biological data collected on RRS James Clark Ross during cruise JR177 at Scotia Sea, Southern Ocean on 2014-02-03. These data include Aragonite Saturation State, SiOH_4, dissolved inorganic Carbon, pCO2, pH, salinity calculated from CTD primary sensors, species, total alkalinity, and water temperature. The instruments used to collect these data include Bongo Net, MARIANDA VINDTA 3C total inorganic carbon and titration alkalinity analyser, MOCNESS, and Microscope-Electron. These data were collected by Geraint Tarling and Sophie Fielding of British Antarctic Survey and Dorothee C.E. Bakker of University of East Anglia as part of the "An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification (OA Nutrition and Coral Calcification)" project and "Ocean Carbon and Biogeochemistry (OCB)" and "Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA) (SEES-OA)" programs. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2019-11-21.

The following is the text of the dataset description provided by BCO-DMO:

Pteropod shell dissolution in natural and high-CO2 environments.

Dataset Description:
This dataset contains data from a study of pteropod shell dissolution on individuals exposed to CO2-enriched seawater. The data include the amount of dissolution as well as the physical and chemical parameters on which carbonate chemistry parameters were calculated.

For more information on the experimental methods and results, see Bednarsek et al., 2012.

This dataset has also been deposited to PANGAEA where additional carbonate system variables were calculated as described by Nisumaa et al., 2010. See: http://doi.pangaea.de/10.1594/PANGAEA.779926
  • Cite as: Tarling, Geraint; Bakker, Dorothee C.E.; Fielding, Sophie (2023). Pteropod shell dissolution in natural and high-CO2 environments from samples collected on RRS James Clark Ross cruise JR177 in the Scotia Sea, Southern Ocean from 2007-2008 (NCEI Accession 0278115). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278115. Accessed [date].
gov.noaa.nodc:0278115
Download Data
  • HTTPS (download)
    Navigate directly to the URL for data access and direct download.
  • FTP (download)
    These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats
  • TSV
Ordering Instructions Contact NCEI for other distribution options and instructions.
Distributor NOAA National Centers for Environmental Information
+1-301-713-3277
NCEI.Info@noaa.gov
Dataset Point of Contact NOAA National Centers for Environmental Information
ncei.info@noaa.gov
Coverage Description Scotia Sea, Southern Ocean
Time Period 2014-02-03 to 2014-02-03
Spatial Bounding Box Coordinates
West:
East:
South:
North:
Spatial Coverage Map
General Documentation
Associated Resources
  • Biological, chemical, physical, biogeochemical, ecological, environmental and other data collected from around the world during historical and contemporary periods of biological and chemical oceanographic exploration and research managed and submitted by the Biological and Chemical Oceanography Data Management Office (BCO-DMO)
    • NCEI Collection
      Navigate directly to the URL for data access and direct download.
  • Tarling, G., Bakker, D. C., Fielding, S. (2014) Pteropod shell dissolution in natural and high-CO2 environments from samples collected on RRS James Clark Ross cruise JR177 in the Scotia Sea, Southern Ocean from 2007-2008. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Dataset version 2014-02-03. https://doi.org/10.1575/1912/bco-dmo.489471.1
  • Parent ID (indicates this dataset is related to other data):
    • gov.noaa.nodc:BCO-DMO
Publication Dates
  • publication: 2023-05-13
Data Presentation Form Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status Complete - production of the data has been completed
Historical archive - data has been stored in an offline storage facility
Data Update Frequency As needed
Supplemental Information
Acquisition Description:
Sample collection:
Pteropods were collected from upper ocean water down to a maximum depth of 200 m from various locations across the Scotia Sea using a combination of vertically and obliquely towed Bongo nets and MOCNESS nets during the JR177 research cruise. Oblique tows were carried out at speeds of less than 1 knot.

Experimental conditions:
A fraction of the captured specimens was preserved immediately in 70% ethanol to act as controls for comparison with those exposed to raised pCO2 conditions. A further fraction of specimens was incubated at various levels of pCO2 to test the effect on shell dissolution. Two liter bottles containing filtered sea water (0.7 um filters) were bubbled with air/CO2 mixtures of 500 ppm, 750 ppm, and 1200 ppm, until the required xCO2 was reached. An average of 30 live pteropod of Limacina helicina ant. were incubated in each experimental container and maintained for 4, 8, and 14 days before extraction and immediate preservation in 70% ethanol. The majority of specimens were juvenile stages of Limacina helicina ant ., but the incubations were also carried out on adult stages of both Limacina helicina ant . and Clio pyramidata f . ant.

Omega was assessed from measurements of DIC (dissolved inorganic carbon) and total alkalinity (TA) at the start and end of each incubation experiment. DIC and TA were measured using VINDTA instrument (Versatile INstrument for the Determination of Titration Alkalinity, Marianda, Kiel, Germany) following the Standard Operating Procedures for oceanic CO 2 measurements (Dickson et al. 2007) with a Certified Reference Material (CRM) analysed in duplicate at the beginning and end of each sample analysis day. Other carbonate chemistry parameters (total pH and Omega-aragonite) were calculated from all discrete samples using DIC, TA, temperature, salinity, pressure and macronutrient concentrations using the CO2SYS programme (Lewis and Wallace 1998) with thermodynamic dissociation constants for K1 and K2 by Mehrbach et al. (1973) refitted by Dickson & Millero (1987).

Shell dehydration:
Dehydration was undertaken using 2,2-Dimethoxypropane (DMP; chemical formula: (CH3)2C(OCH3)2), and 1,1,1,3,3,3-hexamethyldisilazane (HMDS; chemical formula: (CH3)3SiNHSi(CH3)3). Before starting dehydration with DMP, the shells were transferred to 50% methanol for two 5 min washes then transferred to 85% methanol (10 min). Complete tissue dehydration was accomplished by immersion in DMP: two changes at 15-20 min each. It was important not to let the shells air dry at this stage, so they were transferred to a 1:1 mixture of DMP and HMDS for about 10 min, followed by 100% HMDS for 20–25 min twice. The HMDS was subsequently allowed to evaporate allowing the shells to dry completely (Figure 2 of Bednarsek et al., 2012). The moderate vapor pressure and very low surface tension of HMDS allowed the shells to dry without distortion or loss of shell integrity.

SEM:
Scanning Electron Microscopy (SEM) was done using a JEOL JSM 5900LV fitted with a tungsten filament at an acceleration voltage of 15 kV and a working distance of about 10 mm. Analysis of SEM photos enabled observation of the shell surface and identification of shell dissolution. Refer to Bednarsek et al. (2012) for more information on dissolution types.
Purpose This dataset is available to the public for a wide variety of uses including scientific research and analysis.
Use Limitations
  • accessLevel: Public
  • Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
Dataset Citation
  • Cite as: Tarling, Geraint; Bakker, Dorothee C.E.; Fielding, Sophie (2023). Pteropod shell dissolution in natural and high-CO2 environments from samples collected on RRS James Clark Ross cruise JR177 in the Scotia Sea, Southern Ocean from 2007-2008 (NCEI Accession 0278115). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278115. Accessed [date].
Cited Authors
Principal Investigators
Contributors
Resource Providers
Points of Contact
Publishers
Acknowledgments
Theme keywords NODC DATA TYPES THESAURUS NODC OBSERVATION TYPES THESAURUS WMO_CategoryCode
  • oceanography
BCO-DMO Standard Parameters Global Change Master Directory (GCMD) Science Keywords Originator Parameter Names
Data Center keywords NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords
Platform keywords NODC PLATFORM NAMES THESAURUS BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords ICES/SeaDataNet Ship Codes
Instrument keywords NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Global Change Master Directory (GCMD) Instrument Keywords Originator Instrument Names
Place keywords Provider Place Names
Project keywords BCO-DMO Standard Programs BCO-DMO Standard Projects Provider Cruise IDs Provider Funding Award Information
Keywords NCEI ACCESSION NUMBER
Use Constraints
  • Cite as: Tarling, Geraint; Bakker, Dorothee C.E.; Fielding, Sophie (2023). Pteropod shell dissolution in natural and high-CO2 environments from samples collected on RRS James Clark Ross cruise JR177 in the Scotia Sea, Southern Ocean from 2007-2008 (NCEI Accession 0278115). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0278115. Accessed [date].
Data License
Access Constraints
  • Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees
  • In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
Lineage information for: dataset
Processing Steps
  • 2023-05-13T04:00:37Z - NCEI Accession 0278115 v1.1 was published.
Output Datasets
Acquisition Information (collection)
Instrument
  • microscope
  • Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS)
  • net - plankton net
Platform
  • JAMES CLARK ROSS
Last Modified: 2024-06-04T18:34:55Z
For questions about the information on this page, please email: ncei.info@noaa.gov