NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) from 2014-06-13 to 2014-06-19 (NCEI Accession 0277722)
This dataset contains biological data collected on R/V Falkor during cruise FK140613 in the North Pacific Ocean from 2014-06-13 to 2014-06-19. These data include . The instruments used to collect these data include Automated DNA Sequencer, Bioanalyzer, and PCR Thermal Cycler. These data were collected by Dr Erica Goetze of University of Hawaii as part of the "Basin-scale genetics of marine zooplankton (Plankton Population Genetics)" project. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2017-06-12.
The following is the text of the dataset description provided by BCO-DMO:
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample
Dataset Description:
These data include sample information and accession links to sequence data at The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).
This data submission consists of metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1 meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa
Related dataset containing OTU tables and fasta sequences (representative / most abundance read for each OTU):
The following is the text of the dataset description provided by BCO-DMO:
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample
Dataset Description:
These data include sample information and accession links to sequence data at The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).
This data submission consists of metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1 meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa
Related dataset containing OTU tables and fasta sequences (representative / most abundance read for each OTU):
Dataset Citation
- Cite as: Goetze, Erica (2023). NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project) from 2014-06-13 to 2014-06-19 (NCEI Accession 0277722). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0277722. Accessed [date].
Dataset Identifiers
ISO 19115-2 Metadata
gov.noaa.nodc:0277722
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Ordering Instructions | Contact NCEI for other distribution options and instructions. |
Distributor |
NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov |
Dataset Point of Contact |
NOAA National Centers for Environmental Information ncei.info@noaa.gov |
Time Period | 2014-06-13 to 2014-06-19 |
Spatial Bounding Box Coordinates |
West: -158
East: -158
South: 22.75
North: 22.75
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Data Presentation Form | Digital table - digital representation of facts or figures systematically displayed, especially in columns |
Dataset Progress Status | Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility |
Data Update Frequency | As needed |
Supplemental Information | Acquisition Description: SAMPLE INFORMATION Sample identifiers include the following codes. MOCNESS tow FA3: Night sampling FA4: Day sampling Depth range: N1: 1500-1000m N2: 1000-700m N3: 700-500m N4: 500-300m N5: 300-200m N6: 200-150m N7: 150-100m N8: 100-50m N9: 50m-0m Wet-sieved zooplankton size fractions SF1: 0.2-0.5 mm SF2: 0.5-1.0 mm SF3: 1.0-2.0 mm |
Purpose | This dataset is available to the public for a wide variety of uses including scientific research and analysis. |
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Data Center keywords | NODC COLLECTING INSTITUTION NAMES THESAURUS NODC SUBMITTING INSTITUTION NAMES THESAURUS Global Change Master Directory (GCMD) Data Center Keywords |
Platform keywords | NODC PLATFORM NAMES THESAURUS BCO-DMO Platform Names Global Change Master Directory (GCMD) Platform Keywords ICES/SeaDataNet Ship Codes |
Instrument keywords | NODC INSTRUMENT TYPES THESAURUS BCO-DMO Standard Instruments Originator Instrument Names |
Place keywords | NODC SEA AREA NAMES THESAURUS Global Change Master Directory (GCMD) Location Keywords Provider Place Names |
Project keywords | BCO-DMO Standard Projects Provider Cruise IDs Provider Funding Award Information |
Keywords | NCEI ACCESSION NUMBER |
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Last Modified: 2024-05-31T18:50:46Z
For questions about the information on this page, please email: ncei.info@noaa.gov
For questions about the information on this page, please email: ncei.info@noaa.gov