Phytoplankton clone library matches collected from the R/V Atlantic Explorer and R/V Oceanus cruises along the Bermuda Atlantic Time Series Station (BATS) from 2008-2010 (Plankton particle flux project) (NCEI Accession 0277334)
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title: Phytoplankton clone library matches collected from the R/V Atlantic Explorer and R/V Oceanus cruises along the Bermuda Atlantic Time Series Station (BATS) from 2008-2010 (Plankton particle flux project) (NCEI Accession 0277334)
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abstract: This dataset contains biological data collected on R/V Atlantic Explorer and R/V Oceanus during cruises AE0901, AE0902, AE1001, AE1006, AE1009, and OC449-10 from 2008-12-14 to 2010-04-24. These data include depth and taxon. The instruments used to collect these data include CTD profiler, Niskin bottle, and Sediment Trap. These data were collected by Susanne Neuer of Arizona State University as part of the "Composition of the plankton community and its contribution to particle flux in the Sargasso Sea (Plankton particle flux)" project and "Ocean Carbon and Biogeochemistry (OCB)" program. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) submitted these data to NCEI on 2023-01-23. The following is the text of the dataset description provided by BCO-DMO: Phytoplankton clone library matches from BATS cruises 2008-2010 Dataset Description: This dataset includes links to GenBank accession of 18S rRNA gene clone library sequences with the closest sequence matches from the NCBI database. The samples are from the upper water column as well as from shallow drifting traps during regular BATS cruises from December 2008-April 2010.
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name: Arizona State University website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) principalInvestigator
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: http://lod.bco-dmo.org/id/affiliation/191 Biological and Chemical Oceanography Data Management Office (BCO-DMO)
contactInfo: (CI_Contact)
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linkage: http://lod.bco-dmo.org/id/affiliation/191
protocol: HTTP
name: website
description: Institution web page
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role: (CI_RoleCode) pointOfContact
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: http://lod.bco-dmo.org/id/person/51336 Neuer, Susanne
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1878 Arizona State University
contactInfo: (CI_Contact)
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linkage: http://lod.bco-dmo.org/id/person/51336
protocol: HTTPS
name: Arizona State University website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1416 Biological and Chemical Oceanography Data Management Office (BCO-DMO)
contactInfo: (CI_Contact)
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linkage: http://bcodmo.org
protocol: HTTP
name: Biological and Chemical Oceanography Data Management Office website
description: Institution web page
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associationType: (DS_AssociationTypeCode) crossReference
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language:
LanguageCode: eng; USA
characterSet: (MD_CharacterSetCode) utf8
topicCategory: (MD_TopicCategoryCode) environment
topicCategory: (MD_TopicCategoryCode) oceans
topicCategory: (MD_TopicCategoryCode) biota
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westBoundLongitude: -64.6504
eastBoundLongitude: -63.7119
southBoundLatitude: 31.1715
northBoundLatitude: 32.4006
temporalElement: (EX_TemporalExtent)
extent:
TimePeriod:
beginPosition: 2008-12-14
endPosition: 2010-04-24
supplementalInformation: Acquisition Description: Water column samples were collected at BATS during the 2009 and 2010 winter bloom periods from the upper 150 m in Niskin bottles attached to a sampling rosette. Particle interceptor traps (PITs) with both fixed (2% formalin final concentration, deployment time 72 hr) and unfixed (deployment time 24 hr) collection tubes were deployed at 150 m depth in close proximity to the station and during the same time period as the water column collection in order to collect sinking particles below the euphotic zone. Clone libraries were constructed from 2-L samples collected at two depths in the euphotic zone, one close to the surface (10 m) and one from either the bottom of the euphotic zone if the water column was well mixed (most stations sampled; around 120-130 m) or from the chlorophyll maximum if one was present (around 80 m; samples from March 24 and April 24, 2010). Libraries were also constructed from sinking particles collected in two tubes of the PITs from the trap array located at 150 m depth. Unfixed traps were selected unless the sample was unavailable or prior results using DGGE indicated that the fixed trap would be more suitable due to occurrence of fungi and metazoans in the unfixed traps. DNA was extracted from these samples and a region of the 18S ribosomal RNA gene was amplified by PCR using eukaryotic primers. Samples from selected dates and depths were cloned and sequenced and broad taxonomic groups were determined for each sequence using their closest similarity match from BLAST (Basic Local Alignment Search Tool, http://blast.ncbi.nlm.nih.gov/ ).
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distributionInfo: (MD_Distribution)
distributor: (MD_Distributor)
distributorContact: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
phone: (CI_Telephone)
voice: +1-301-713-3277
address: (CI_Address)
electronicMailAddress: NCEI.Info@noaa.gov
role: (CI_RoleCode) pointOfContact
distributionOrderProcess: (MD_StandardOrderProcess)
fees: In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
orderingInstructions: Contact NCEI for other distribution options and instructions.
distributorFormat: (MD_Format)
name: TSV
version: (unknown)
distributorTransferOptions: (MD_DigitalTransferOptions)
transferSize:
Real: 0.8
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0277334
protocol: HTTPS
applicationProfile: Web browser
name: NCEI Dataset Landing Page
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/oas/277334
protocol: HTTPS
applicationProfile: Web browser
name: Descriptive Information
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/download/277334
protocol: HTTPS
applicationProfile: Web browser
name: HTTPS
description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0211/0277334/
protocol: FTP
applicationProfile: Any FTP client
name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NCEI Accession 0277334 v1.1 was published.
dateTime:
DateTime: 2023-04-01T14:55:36Z
output: (LE_Source)
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title: NCEI Accession 0277334 v1.1
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0277334/1.1
protocol: HTTPS
name: NCEI Accession 0277334 v1.1
description: published 2023-04-01T14:55:36Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
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metadataMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
maintenanceNote: Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
role: (CI_RoleCode) custodian
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acquisitionInformation: (MI_AcquisitionInformation)
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: bottle
type: bottle
description: any type of water bottle sampling device Generic name for water collection device; usually used to determine temperature, salinity and provide water aliquots for measurement of a wide range of parameters; often referred to by a specific type of water sampling bottle, such as a Nansen or Niskin bottle.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: CTD
type: CTD
description: Conductivity-Temperature-Depth probe
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: trap - sediment
type: trap - sediment
description: one of several specific type of instrument used to capture sediment
platform: (MI_Platform)
identifier: (MD_Identifier)
code: OCEANUS
description: Flag: United States of America Vessel Type: Research Vessel DOB: 1975 IMO: 7603617 MMSI: 367977000
instrument: (missing)
platform: (MI_Platform)
identifier: (MD_Identifier)
code: RV Atlantic Explorer
description: Updated information from ICES for for the vessel Atlantic Explorer from UNITED STATES. Code : 33H4 Name : Atlantic Explorer Flag : UNITED STATES - US (ISO Country Code) Call Sign : WDC9417 Title : RV Platform Class : 31 Research vessel IMO : 8120014 Commissioned Date : 2005-10 Current Length : 51 Built : 1982 Previous Name (Notes): Seward Johnson II Notes : Bermuda Biological Station, Bermuda Institute of Ocean Sciences (BIOS) since 2005-10. Built as Trojan then renamed Edwin Link and Seward Johnson II. Active as at 2007-07. Lloyds URL : http://www.lloydsmiu.com/lmiu/vessels/overview.htm?vesselID=303109 Additional Information Sources: - http://www.marinetraffic.com/ais/shipdetails.aspx?MMSI=303591000 Same Vessels Info: 33EL - EDWIN LINK 33S2 - SEWARD JOHNSON II General Comments: Call sign: WDC9417 - information from ship captain. Clarified faulty info from the following: Oceanic=WST4798, Lloyds = WDC8916 , ITU = WDC9417
instrument: (missing)
