Biological effects of ocean acidification on juvenile Atlantic surfclams (Spisula solidissima) observed in laboratory experiments from 2019-04-10 to 2019-07-03 (NCEI Accession 0245952)
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abstract: This dataset contains laboratory experimental data that were collected to examine the effects of elevated levels of carbon dioxide on the growth of Atlantic surfclam (Spisula solidissima), a species that supports both commercial and recreational fisheries in the Northeast United States. Three levels of carbon dioxide enrichment (low, medium, and high) were delivered to surfclams in a 12-week exposure experiment. All treatments were done in 3 replicates (A, B, C). Approximately every 2 to 3 weeks, 12 individuals were removed from each treatment and measurements of length, width, height, dry tissue, and dry shell were recorded. Length was measured across the longest part of the shell, parallel to the hinge. Width was the thickness of the shell, and height was measured form the hinge to the outer edge of the shell. Dry tissue and dry shell samples were dried at 60°C until constant weight was achieved (~5 days). DIC measurements of carbon dioxide enrichment were taken and analyzed on an Apollo SciTech, while pH was measured weekly with a spectrophotometer. Values reported for DIC, pH, temperature, and salinity are the mean of each treatment during the 12-week experiment. The data indicated that increased carbon dioxide affected growth, tissue mass, and shell weight for Atlantic surfclam.
purpose: To determine if increase carbon dioxide would effect growth, tissue weight, and shell weight of Atlantic surfclams.
credit: Funding Information: NOAA Ocean Acidification Program (OA Growth Affects on Eastern oysters Atlantic surfclams and Atlantic sea scallops (Meseck NEFSC), 17911)
credit: Funding Information: NOAA OAP (“Is Scope for Growth of Eastern oysters, Crassostrea virginica, Atlantic surfclams, Spisula solidissima, and Atlantic sea scallops, Placopecten magellanicus, affected by ocean acidification?”)
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onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
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name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2023. GCMD Keywords, Version 18. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
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title: OCADS Study Type
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descriptiveKeywords: (MD_Keywords)
keyword: Atlantic surfclam
keyword: Spisula solidissima
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keyword: DIC
keyword: H
keyword: L
keyword: SM
keyword: Salinity
keyword: TM
keyword: Temperature
keyword: W
keyword: exposure
keyword: pCo2
keyword: pH
keyword: pH (in situ)
keyword: replicate letter
keyword: ΩC
keyword: Ωa
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Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/a4202721-0cba-4fa1-853f-890f146b04f9 OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN
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linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
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name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2023. GCMD Keywords, Version 18. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
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keyword: CT
keyword: Milford
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otherConstraints: Cite as: Pousse, Emilien; Poach, Matthew; Redman, Dylan H.; Sennefelder, George; Munroe, Daphne; Hart, Deborah R.; Hennen, Daniel R.; Dixon, Mark S.; Li, Yaqin; Wikfors, Gary H.; Meseck, Shannon L. (2022). Biological effects of ocean acidification on juvenile Atlantic surfclams (Spisula solidissima) observed in laboratory experiments from 2019-04-10 to 2019-07-03 (NCEI Accession 0245952). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://doi.org/10.25921/fesj-kv54. Accessed [date].
resourceConstraints: (MD_LegalConstraints)
useLimitation: Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
resourceConstraints: (MD_LegalConstraints)
accessConstraints: (MD_RestrictionCode) otherRestrictions
otherConstraints: Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
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aggregateDataSetName: (CI_Citation)
title: NOAA National Centers for Environmental Information (2022). Ocean Carbon and Acidification Data System (OCADS). NOAA National Centers for Environmental Information. https://www.ncei.noaa.gov/products/ocean-carbon-acidification-data-system
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date: 2022-04
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description: OCADS website
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Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
role: (CI_RoleCode) author
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Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 US DOC; NOAA; NESDIS; National Centers for Environmental Information (NCEI)
role: (CI_RoleCode) publisher
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language:
LanguageCode: eng; USA
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topicCategory: (MD_TopicCategoryCode) environment
topicCategory: (MD_TopicCategoryCode) oceans
topicCategory: (MD_TopicCategoryCode) biota
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westBoundLongitude: -73.051877
eastBoundLongitude: -73.051877
southBoundLatitude: 41.211919
northBoundLatitude: 41.211919
temporalElement: (EX_TemporalExtent)
extent:
TimePeriod:
beginPosition: 2019-04-10
endPosition: 2019-07-03
supplementalInformation: This data package (Submission ID: BFUVKZ3TD) was acquired by NCEI from the Scientific Data Integration System (SDIS) at the NOAA Pacific Marine Environmental Laboratory (PMEL) in accordance with the archival submission agreement between NCEI and PMEL. In this accession, NCEI has archived multiple versions of these data. The latest (and best) version of these data has the largest version number.
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distributionInfo: (MD_Distribution)
distributor: (MD_Distributor)
distributorContact: (CI_ResponsibleParty)
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Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
phone: (CI_Telephone)
voice: +1-301-713-3277
address: (CI_Address)
electronicMailAddress: NCEI.Info@noaa.gov
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distributionOrderProcess: (MD_StandardOrderProcess)
fees: In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
orderingInstructions: Contact NCEI for other distribution options and instructions.
distributorFormat: (MD_Format)
name: Originator data format
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linkage: https://www.ncei.noaa.gov/data/oceans/ncei/ocads/metadata/0245952.html
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description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
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linkage: https://doi.org/10.25921/fesj-kv54
protocol: HTTPS
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description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/oas/245952
protocol: HTTPS
applicationProfile: Web browser
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description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/download/245952
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applicationProfile: Web browser
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description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
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linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0194/0245952/
protocol: FTP
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name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
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description: NCEI Accession 0245952 v1.1 was published.
dateTime:
DateTime: 2022-01-28T22:26:22Z
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title: NCEI Accession 0245952 v1.1
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
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individualName: (inapplicable)
contactInfo: (CI_Contact)
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linkage: https://www.ncei.noaa.gov/archive/accession/0245952/1.1
protocol: HTTPS
name: NCEI Accession 0245952 v1.1
description: published 2022-01-28T22:26:22Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
processStep: (LE_ProcessStep)
description: NCEI Accession 0245952 was revised and v2.2 was published.
rationale: Updates were received for this dataset. These updates were copied into the data/0-data/ directory of this accession. These updates may provide additional files or replace obsolete files. This version contains the most complete and up-to-date representation of this archival information package. All of the files received prior to this update are available in the preceding version of this accession.
dateTime:
DateTime: 2022-03-09T22:04:18Z
output: (LE_Source)
sourceCitation: (CI_Citation)
title: NCEI Accession 0245952 v2.2
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0245952/2.2
protocol: HTTPS
name: NCEI Accession 0245952 v2.2
description: published 2022-03-09T22:04:18Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
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dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: Parameter or Variable: Dissolved Inorganic Carbon; Abbreviation: DIC; Unit: umol/kg; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: manipulation condition; Measured or calculated: Measured; Sampling instrument: Polypropylene bottle; Analyzing instrument: Discrete dissolved inorganic carbon (DIC) measurement (Non-dispersive infrared, or NDIR); Detailed sampling and analyzing information: DIC samples were analyzed on an Apollo SciTech DIC analyzer (Apollo SciTech, LLC, Newark, DE).Precision of the DIC instrument was confirmed by an international interlaboratory comparison exercise that consisted of low and high CO2 test seawater samples, with the laboratory being within 0.5% of assigned values (Bockmon and Dickson, 2015). During analysis, replicate measurements (n = 3) on a certified reference material were within ±2.7 μmol kg− 1 of the reported value.; Replicate information: Triplicate samples; Standardization description: CRMs; Standardization frequency: daily; CRM manufacturer: Andrew Dickson's lab at Scripps Institute of Oceanography.; Preservation method: run within minutes of collection; Preservative volume: none; Preservative correction: none; Uncertainty: ±2.7 μmol kg− 1; Researcher name: Shannon Meseck; Researcher institution: NOAA NMFS.
processStep: (LE_ProcessStep)
description: Parameter or Variable: pH; Abbreviation: pH; pH scale: seawater scale; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: manipulation condition; Measured or calculated: Measured; Sampling instrument: Polypropylene bottle; Analyzing instrument: Spectrophotometer; Detailed sampling and analyzing information: Total pH was determined colorimetrically at 20 ◦C using a metacresol purple indicator dye (Sigma-Aldrich, St. Louise, MS, Dickson and Goyet, 1994) with a UV-VIS spectrophotometer (Cary100, Agilent, Santa Clara, CA, USA). Tris-buffer was used to ensure accuracy of the measurements.; Replicate information: Triplicate samples; Standardization description: TRIS BUFFER, Andrew Dickson Acid; Standardization frequency: weekly; Temperature of standardization: 20 ◦C; Temperature correction method: water bath; At what temperature was pH reported: 20 ◦C; Uncertainty: ± 0.0014.
processStep: (LE_ProcessStep)
description: Parameter or Variable: exposure; Abbreviation: exposure; Unit: days; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: response variable; Measured or calculated: Measured; Calculation method and parameters: None; Sampling instrument: None; Analyzing instrument: NOne; Duration: 12 weeks; Detailed sampling and analyzing information: Exposure is the number of days that the animal was exposed to carbon dioxide.; Method reference: None; Biological subject: Atlantic Surfclam; Species ID: 80945; Researcher name: Shannon Meseck; Researcher institution: NOAA NMFS.
processStep: (LE_ProcessStep)
description: Parameter or Variable: pH; Abbreviation: pH (in situ); Unit: ph seawater scale; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: manipulation condition; Measured or calculated: Calculated; Calculation method and parameters: CO2SYS; Sampling instrument: Polypropylene bottle; Analyzing instrument: Spectrophotometer; Duration: 12 weeks; Detailed sampling and analyzing information: Calculated pH at in situ temperature; Replicate information: Triplicate samples; Biological subject: Atlantic surfclam; Species ID: 80945; Researcher name: Shannon Meseck; Researcher institution: NOAA NMFS.
processStep: (LE_ProcessStep)
description: Parameter or Variable: Salinity; Abbreviation: Salinity; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: in-situ observation; Measured or calculated: Measured; Sampling instrument: YSI - handheld multi-parameter instrument; Analyzing instrument: YSI - handheld multi-parameter instrument; Duration: 12 weeks; Detailed sampling and analyzing information: Daily water variables (temperature, salinity) were measured with a YSI probe (Model 556, Yellowspring, OH USA); Uncertainty: 0.1; Biological subject: Atlantic Surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: water temperature; Abbreviation: Temperature; Unit: C; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: in-situ observation; Measured or calculated: Measured; Sampling instrument: YSI - handheld multi-parameter instrument; Analyzing instrument: YSI - handheld multi-parameter instrument; Duration: 12 weeks; Detailed sampling and analyzing information: Daily water variables (temperature, salinity) were measured with a YSI probe (Model 556, Yellowspring, OH USA); Uncertainty: 0.1; Biological subject: Atlantic Surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: partial pressure (or fugacity) of carbon dioxide - water; Abbreviation: pCo2; Unit: uatm; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: manipulation condition; Measured or calculated: Calculated; Calculation method and parameters: CO2 sys; Duration: 12 week; Detailed sampling and analyzing information: DIC and pH were used in CO2SYS (Pierrot et al., 2006) for the calculation of ρCO2 (μatm), ΩCalcite, and Ωaragonite using the following constants: K1, K2 from Mehrbach et al. (1973) refit by Dickson and Millero (1987); K hydrogen sulfate from Dickson et al. (1990); and total Boron from Uppstrom 1974).; Biological subject: Atlantic Surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: calcite saturation state; Abbreviation: ΩC; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: manipulation condition; Measured or calculated: Calculated; Calculation method and parameters: CO2sys; Duration: 12 week; Detailed sampling and analyzing information: DIC and pH were used in CO2SYS (Pierrot et al., 2006) for the calculation of ρCO2 (μatm), ΩCalcite, and Ωaragonite using the following constants: K1, K2 from Mehrbach et al. (1973) refit by Dickson and Millero (1987); K hydrogen sulfate from Dickson et al. (1990); and total Boron from Uppstrom (1974).; Biological subject: Atlantic surflcam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: aragonite saturation state; Abbreviation: Ωa; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: manipulation condition; Measured or calculated: Calculated; Calculation method and parameters: co2sys; Duration: 12 week; Detailed sampling and analyzing information: DIC and pH were used in CO2SYS (Pierrot et al., 2006) for the calculation of ρCO2 (μatm), ΩCalcite, and Ωaragonite using the following constants: K1, K2 from Mehrbach et al. (1973) refit by Dickson and Millero (1987); K hydrogen sulfate from Dickson et al. (1990); and total Boron from Uppstrom (1974).; Biological subject: Atlantic Surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: treatment letter; Abbreviation: replicate letter; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: response variable; Measured or calculated: Measured; Calculation method and parameters: none; Duration: 12 week; Detailed sampling and analyzing information: This is the container number for each treatment. Each level of carbon dioxide had 3 replicates identified as A, B, C. The initial measurements at day zero would apply to all treatments.; Biological subject: Atlantic surfclams; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: shell parameters (length or weight); Abbreviation: L; Unit: mm; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: response variable; Measured or calculated: Measured; Sampling instrument: Traceable digital calipers calibrated; Analyzing instrument: calipers; Duration: 12 week; Detailed sampling and analyzing information: Length was measured across the longest part of the shell. Parallel to the hinge; Biological subject: Atlantic surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: width of bivalve; Abbreviation: W; Unit: mm; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: response variable; Measured or calculated: Measured; Sampling instrument: Traceable Digital Caliper with Calibration; Analyzing instrument: Caliper; Duration: 12 week; Detailed sampling and analyzing information: Width of the bivalve was measured as the thickness of the organism where the shells are joined together.; Biological subject: Atlantic surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: height; Abbreviation: H; Unit: mm; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: response variable; Measured or calculated: Measured; Sampling instrument: Traceable Digital Caliper with Calibration; Analyzing instrument: Calipers; Duration: 12 week; Detailed sampling and analyzing information: Height was measured from the hinge to the outer edge of the shell.; Biological subject: Atlantic surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: dry weight tissue mass; Abbreviation: TM; Unit: g; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: response variable; Measured or calculated: Measured; Sampling instrument: Balance; Analyzing instrument: Balance; Duration: 12 week; Detailed sampling and analyzing information: Tissue was dried at 60C to constant weight then dry tissue weight was measured.; Biological subject: Atlantic surfclam; Species ID: 80945.
processStep: (LE_ProcessStep)
description: Parameter or Variable: shell dry mass; Abbreviation: SM; Unit: g; Observation type: Laboratory experiment; In-situ / Manipulation / Response variable: response variable; Measured or calculated: Measured; Sampling instrument: Balance; Analyzing instrument: Balance; Duration: 12 weeks; Detailed sampling and analyzing information: Shell were dried until constant weight at 60C then weighed on a balance to get dry shell mass; Biological subject: Atlantic surfclam; Species ID: 80945 .
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metadataMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
maintenanceNote: Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
maintenanceNote: NCEI Accession 0245952 was revised and a new version of the archival package was published. Updates to existing archival packages may provide additional files or replace obsolete files. The latest version contains the most complete and up-to-date representation of this archival information package. All of the files received prior to this update are available in the preceding version of this accession. Please see journal.txt in the /about directory for additional details on changes made.
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
role: (CI_RoleCode) custodian
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acquisitionInformation: (MI_AcquisitionInformation)
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: bottle
type: bottle
description: any type of water bottle sampling device Generic name for water collection device; usually used to determine temperature, salinity and provide water aliquots for measurement of a wide range of parameters; often referred to by a specific type of water sampling bottle, such as a Nansen or Niskin bottle.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: calipers
type: calipers
description: An instrument for measuring distance.
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: multi-parameter water quality sensor
type: multi-parameter water quality sensor
description: used to measure temperature, salinity, dissolved oxygen, and other parameters Instrument used to measure temperature, salinity, dissolved oxygen, and other parameters, often used to measure water quality parameters. Can be a hand-held instrument or a sonde for unattended monitoring. Often used in coastal water monitoring stations. YSI is the preeminent brand (as of 2024).
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: scale
type: scale
description: An instrument for measuring mass or weight.
