Proteomic Signatures of Corals from Thermodynamic Reefs (NCEI Accession 0216077)
- identificationInfo
- distributionInfo
- dataQualityInfo
- dataQualityInfo
- metadataMaintenance
- acquisitionInformation
(MI_Metadata)
fileIdentifier: gov.noaa.nodc:0216077
language:
LanguageCode: eng
characterSet: (MD_CharacterSetCode) utf8
hierarchyLevel: (MD_ScopeCode) dataset
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: ncei.info@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/contact
protocol: HTTPS
name: NOAA Contact Information
description: Information for contacts at NCEI.
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
dateStamp:
DateTime: 2024-06-02T18:48:50Z
metadataStandardName: ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
metadataStandardVersion: ISO 19115-2:2009(E)
return to top
identificationInfo: (MD_DataIdentification)
citation: (CI_Citation)
title: Proteomic Signatures of Corals from Thermodynamic Reefs (NCEI Accession 0216077)
date: (CI_Date)
date: 2020-09-09
dateType: (CI_DateTypeCode) publication
edition: (inapplicable)
identifier: (MD_Identifier)
authority: (CI_Citation)
title: NOAA National Centers for Environmental Information
date: (inapplicable)
code:
Anchor: NCEI Dataset ID gov.noaa.nodc:0216077
identifier: (MD_Identifier)
authority: (CI_Citation)
title: NCEI Archive Management System
date: (inapplicable)
code:
Anchor: NCEI Accession ID 0216077
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: ncei.info@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/contact
protocol: HTTPS
name: NCEI Contact Information
description: Information for contacts at NCEI.
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) publisher
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/person/details/5399 Anderson B. Mayfield
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/268 US DOC; NOAA; OAR; Atlantic Oceanographic and Meteorological Laboratory (AOML)
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: andersonblairmayfield@gmail.com
onlineResource: (CI_OnlineResource)
linkage: https://www.aoml.noaa.gov/
protocol: HTTPS
name: NOAA Atlantic Oceanographic and Meteorological Laboratory website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) resourceProvider
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/268 US DOC; NOAA; OAR; Atlantic Oceanographic and Meteorological Laboratory (AOML)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.aoml.noaa.gov/
protocol: HTTPS
name: NOAA Atlantic Oceanographic and Meteorological Laboratory website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) resourceProvider
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/person/details/5399 Anderson B. Mayfield
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1576 University of Miami (UM)
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: abm64@miami.edu
onlineResource: (CI_OnlineResource)
linkage: http://www.miami.edu/
protocol: HTTP
name: University of Miami website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) principalInvestigator
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/person/details/5399 Mayfield, Anderson B.
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1576 University of Miami (UM)
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: anderson.mayfield@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: http://www.miami.edu/
protocol: HTTP
name: University of Miami website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/2150 Cooperative Institute for Marine and Atmospheric Studies, University of Miami
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://cimas.earth.miami.edu/
protocol: HTTPS
name: Cooperative Institute for Marine and Atmospheric Studies website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/268 Atlantic Oceanographic and Meteorological Laboratory (AOML)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.aoml.noaa.gov/
protocol: HTTPS
name: NOAA Atlantic Oceanographic and Meteorological Laboratory website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1576 University of Miami (UM)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: http://www.miami.edu/
protocol: HTTP
name: University of Miami website
description: Institution web page
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) contributor
presentationForm: (CI_PresentationFormCode) tableDigital
abstract: In this work, I took a protein profiling approach known as iTRAQ approach to characterize and quantify the proteins synthesized by 12 experimental coral samples. Specifically, corals were collected from an upwelling site in the Luzon Strait ("Houbihu"; 21°56’18.01’’N, 120°44’45.54’’E) and a non-upwelling "control" site in the nearby Taiwan Strait ("Houwan"; 22°01'23.30"N, 120°41'18.29"E) and exposed to either highly variable (upwelling-simulating) or stable temperatures in the laboratory for seven days prior to sacrificing for protein analysis (the "Seriatopora hystrix variable temperature study" [SHVTS]). In this submission, I have uploaded the proofs of the manuscript describing the proteomic data (Mayfield in press Microorganisms), two RAW files (SHVTS-A & SHVTS-B for iTRAQ batches A & B, respectively), two MZML (open-access mass spectrometry data) files (SHVTS-A.mzml & SHVTS-B.mzml), two MZID files (SHVTS-A.mzid & SHVTS-B.mzid), and a tab-delimited file that describes which samples were labeled with which iTRAQ tag ("Mayfield online supplemental data file"). I have also uploaded the supplemental material that accompanies the Mayfield (in press) article since that is what readers interested in the specifics of the proteomic analysis pipeline should consult. The peak data were queried against a conceptually translated S. hystrix-Cladocopium dinoflagellate transcriptome described in Mayfield et al. (2016 Mol Ecol) and found here: http://symbiont.iis.sinica.edu.tw/s_hystrix/static/html/#stat. Please note that all proteomic data represent a mix of multiple organisms (namely the anthozoan host and the dinoflagellate endosymbionts that inhabit their gastrodermal cells). All data analysis was conducted with Proteome Discoverer (Thermo-Fisher Scientific).
purpose: These data were collected to better understand the cellular biology of thermo-tolerant corals (i.e., those that can tolerate wide fluctuations in temperature). For more details, please see the articles referenced in the data package and on my personal website: coralreefdiagnostics.com.
credit: Related Funding Agency: Friendly Bear Editorial Service
credit: Related Funding Agency: MacArthur Foundation
status: (MD_ProgressCode) completed
status: (MD_ProgressCode) historicalArchive
pointOfContact: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
address: (CI_Address)
electronicMailAddress: ncei.info@noaa.gov
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/contact
protocol: HTTPS
name: NCEI Contact Information
description: Information for contacts at NCEI.
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) pointOfContact
resourceMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
graphicOverview: (MD_BrowseGraphic)
fileName: https://www.ncei.noaa.gov/access/metadata/landing-page/bin/gfx?id=gov.noaa.nodc:0216077
fileDescription: Preview graphic
fileType: PNG
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/accession/0216077 0216077
thesaurusName: (CI_Citation)
title: NCEI ACCESSION NUMBER
date: (CI_Date)
date: 2020-08-01
dateType: (CI_DateTypeCode) publication
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/93 CORAL
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/235 ORGANIC CHEMICALS
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: NODC DATA TYPES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/162 mass spectrometer
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/40 swimmer/diver
type: (MD_KeywordTypeCode) instrument
thesaurusName: (CI_Citation)
title: NODC INSTRUMENT TYPES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/2 biological
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/obstype/details/35 laboratory analyses
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: NODC OBSERVATION TYPES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1576 University of Miami
type: (MD_KeywordTypeCode) dataCentre
thesaurusName: (CI_Citation)
title: NODC COLLECTING INSTITUTION NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/268 US DOC; NOAA; OAR; Atlantic Oceanographic and Meteorological Laboratory
type: (MD_KeywordTypeCode) dataCentre
thesaurusName: (CI_Citation)
title: NODC SUBMITTING INSTITUTION NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/seaname/details/106 South China Sea (Nan Hai)
keyword:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/seaname/details/111 Taiwan Strait or Formosa Strait (T'ai-Wan Hai-Hsia)
type: (MD_KeywordTypeCode) place
thesaurusName: (CI_Citation)
title: NODC SEA AREA NAMES THESAURUS
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword: oceanography
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: WMO_CategoryCode
date: (CI_Date)
date: 2012-09-15
dateType: (CI_DateTypeCode) publication
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/274cc3ed-e075-4fb3-89cd-51fa72bc64f9 DOC/NOAA/OAR/AOML > Atlantic Oceanographic and Meteorological Laboratory, OAR, NOAA, U.S. Department of Commerce
type: (MD_KeywordTypeCode) dataCentre
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Data Center Keywords
date: (CI_Date)
date: 2023
dateType: (CI_DateTypeCode) revision
edition: 18
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2023. GCMD Keywords, Version 18. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
descriptiveKeywords: (MD_Keywords)
keyword: Numeric Data Sets > Biology
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: CoRIS Discovery Thesaurus
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Molecular Genetic Analysis > Proteomic Analysis
keyword: EARTH SCIENCE > Biosphere > Zoology > Corals > Scleractinia (stony corals)
keyword: EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs
keyword: EARTH SCIENCE > Oceans > Marine Biology > Coral
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: CoRIS Theme Thesaurus
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/6eb3919b-85ce-4988-8b78-9d0018fd8089 EARTH SCIENCE > OCEANS > OCEAN CHEMISTRY
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/dff4d4af-e1e0-4991-884b-a1c088a802b2 EARTH SCIENCE > SOLID EARTH > GEOMORPHIC LANDFORMS/PROCESSES > COASTAL LANDFORMS > CORAL REEFS
type: (MD_KeywordTypeCode) theme
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Science Keywords
date: (CI_Date)
date: 2023
dateType: (CI_DateTypeCode) revision
edition: 18
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2023. GCMD Keywords, Version 18. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/09c35c61-d1ed-4591-b4d5-c539a2a0aec2 MASS SPECTROMETERS > MASS SPECTROMETERS
type: (MD_KeywordTypeCode) instrument
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Instrument Keywords
date: (CI_Date)
date: 2023
dateType: (CI_DateTypeCode) revision
edition: 18
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2023. GCMD Keywords, Version 18. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
descriptiveKeywords: (MD_Keywords)
keyword: COUNTRY/TERRITORY > Taiwan > Hengchung > Nanwan Bay (21N120E0008)
keyword: OCEAN BASIN > Pacific Ocean > Hengchung > Nanwan Bay (21N120E0008)
type: (MD_KeywordTypeCode) place
thesaurusName: (CI_Citation)
title: CoRIS Place Thesaurus
date: (inapplicable)
descriptiveKeywords: (MD_Keywords)
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/5488b1cc-08b2-41cf-9bd2-4a2cdd0990de OCEAN > PACIFIC OCEAN > NORTH PACIFIC OCEAN
keyword:
Anchor: https://gcmd.earthdata.nasa.gov/kms/concept/89eb3337-707f-496d-9850-a6312ca42ecf OCEAN > PACIFIC OCEAN > WESTERN PACIFIC OCEAN > SOUTH CHINA SEA
type: (MD_KeywordTypeCode) place
thesaurusName: (CI_Citation)
title: Global Change Master Directory (GCMD) Location Keywords
date: (CI_Date)
date: 2023
dateType: (CI_DateTypeCode) revision
edition: 18
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA)
contactInfo: (CI_Contact)
address: (CI_Address)
city: Greenbelt
administrativeArea: MD
onlineResource: (CI_OnlineResource)
linkage: https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
protocol: HTTPS
name: GCMD Keyword Forum Page
description: Global Change Master Directory (GCMD). 2023. GCMD Keywords, Version 18. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords
function: (CI_OnLineFunctionCode) information
role: (CI_RoleCode) custodian
resourceConstraints: (MD_Constraints)
useLimitation: accessLevel: Public
resourceConstraints: (MD_LegalConstraints)
useConstraints: (MD_RestrictionCode) otherRestrictions
otherConstraints: Cite as: Mayfield, Anderson B.; Cooperative Institute for Marine and Atmospheric Studies, University of Miami; Atlantic Oceanographic and Meteorological Laboratory (AOML) (2020). Proteomic Signatures of Corals from Thermodynamic Reefs (NCEI Accession 0216077). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0216077. Accessed [date].
resourceConstraints: (MD_LegalConstraints)
useLimitation: Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
resourceConstraints: (MD_LegalConstraints)
accessConstraints: (MD_RestrictionCode) otherRestrictions
otherConstraints: Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Proteomic signatures of corals from thermodynamic reefs
date: (CI_Date)
date: 2020
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=558adcff310b48279b6692dbe3ea41c0
protocol: HTTPS
name: Proteomic signatures of corals from thermodynamic reefs
description: MassIVE Metadata Record
function: (CI_OnLineFunctionCode) information
role: (unknown)
associationType: (DS_AssociationTypeCode) crossReference
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Mayfield, A., Chan, P.-H., Putnam, H. M., Chen, C.-S., & Fan, T.-Y. (2012). The effects of a variable temperature regime on the physiology of the reef-building coralSeriatopora hystrix: results from a laboratory-based reciprocal transplant. Journal of Experimental Biology. https://doi.org/10.1242/jeb.071688
date: (CI_Date)
date: 2012-01-01
dateType: (CI_DateTypeCode) publication
identifier: (MD_Identifier)
authority: (CI_Citation)
title: International DOI Foundation (IDF)
date: (inapplicable)
code: https://doi.org/10.1242/jeb.071688
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://doi.org/10.1242/jeb.071688
protocol: HTTPS
name: https://doi.org/10.1242/jeb.071688
description: related journal article
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Mayfield, Anderson
organisationName: National Museum of Marine Biology and Aquarium;
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Chan, Pei-Hsun
organisationName: National Museum of Marine Biology and Aquarium;
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Putnam, Hollie M
organisationName: Hawaii Institute of Marine Biology
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Chen, Chii-Shiarng
organisationName: National Museum of Marine Biology and Aquarium;
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
individualName: Fan, Tung-Yung
organisationName: National Museum of Marine Biology and Aquarium;
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: The Company of Biologists
role: (CI_RoleCode) publisher
presentationForm: (CI_PresentationFormCode) documentDigital
series: (CI_Series)
name: Journal of Experimental Biology
otherCitationDetails: ISSN 1477-9145, ISSN 0022-0949
associationType: (DS_AssociationTypeCode) crossReference
aggregationInfo: (MD_AggregateInformation)
aggregateDataSetName: (CI_Citation)
title: Mayfield, A. B. (2020). Proteomic Signatures of Corals from Thermodynamic Reefs. Microorganisms, 8(8), 1171. https://doi.org/10.3390/microorganisms8081171
date: (CI_Date)
date: 2020-08-01
dateType: (CI_DateTypeCode) publication
identifier: (MD_Identifier)
authority: (CI_Citation)
title: International DOI Foundation (IDF)
date: (inapplicable)
code: https://doi.org/10.3390/microorganisms8081171
citedResponsibleParty: (CI_ResponsibleParty)
positionName: (unknown)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://doi.org/10.3390/microorganisms8081171
protocol: HTTPS
name: https://doi.org/10.3390/microorganisms8081171
description: NOAA Central Library: Journal Article
function: (CI_OnLineFunctionCode) information
role: (unknown)
citedResponsibleParty: (CI_ResponsibleParty)
individualName:
Anchor: https://orcid.org/0000-0003-0138-7844 Mayfield, Anderson B.
role: (CI_RoleCode) author
citedResponsibleParty: (CI_ResponsibleParty)
organisationName: MDPI AG
role: (CI_RoleCode) publisher
presentationForm: (CI_PresentationFormCode) documentDigital
series: (CI_Series)
name: Microorganisms
issueIdentification: 8(8)
otherCitationDetails: ISSN 2076-2607, p. 1171
associationType: (DS_AssociationTypeCode) crossReference
initiativeType: (DS_InitiativeTypeCode) collection
language:
LanguageCode: eng; USA
characterSet: (MD_CharacterSetCode) utf8
topicCategory: (MD_TopicCategoryCode) environment
topicCategory: (MD_TopicCategoryCode) oceans
topicCategory: (MD_TopicCategoryCode) biota
extent: (EX_Extent)
geographicElement: (EX_GeographicBoundingBox)
westBoundLongitude: 120.68841
eastBoundLongitude: 120.74598
southBoundLatitude: 21.93834
northBoundLatitude: 22.02314
temporalElement: (EX_TemporalExtent)
extent:
TimePeriod:
beginPosition: 2010-05-14
endPosition: 2010-06-15
supplementalInformation: Submission Package ID: BELJ6L
return to top
distributionInfo: (MD_Distribution)
distributor: (MD_Distributor)
distributorContact: (CI_ResponsibleParty)
organisationName:
Anchor: https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/institution/details/1730 NOAA National Centers for Environmental Information
contactInfo: (CI_Contact)
phone: (CI_Telephone)
voice: +1-301-713-3277
address: (CI_Address)
electronicMailAddress: NCEI.Info@noaa.gov
role: (CI_RoleCode) pointOfContact
distributionOrderProcess: (MD_StandardOrderProcess)
fees: In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.
orderingInstructions: Contact NCEI for other distribution options and instructions.
distributorFormat: (MD_Format)
name: XLSX
version: (unknown)
distributorFormat: (MD_Format)
name: ODS
version: (unknown)
distributorFormat: (MD_Format)
name: PDF
version: (unknown)
distributorFormat: (MD_Format)
name: MZID
version: (unknown)
distributorFormat: (MD_Format)
name: MZML
version: (unknown)
distributorFormat: (MD_Format)
name: RAW
version: (unknown)
distributorFormat: (MD_Format)
name: FA
version: (unknown)
distributorTransferOptions: (MD_DigitalTransferOptions)
transferSize:
Real: 1450.828
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0216077
protocol: HTTPS
applicationProfile: Web browser
name: NCEI Dataset Landing Page
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/oas/216077
protocol: HTTPS
applicationProfile: Web browser
name: Descriptive Information
description: Navigate directly to the URL for a descriptive web page with download links.
function: (CI_OnLineFunctionCode) information
onLine: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/download/216077
protocol: HTTPS
applicationProfile: Web browser
name: HTTPS
description: Navigate directly to the URL for data access and direct download.
function: (CI_OnLineFunctionCode) download
onLine: (CI_OnlineResource)
linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0159/0216077/
protocol: FTP
applicationProfile: Any FTP client
name: FTP
description: These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
function: (CI_OnLineFunctionCode) download
return to top
dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: NCEI Accession 0216077 v1.1 was published.
dateTime:
DateTime: 2020-09-09T12:46:25Z
output: (LE_Source)
sourceCitation: (CI_Citation)
title: NCEI Accession 0216077 v1.1
date: (CI_Date)
date: (inapplicable)
dateType: (CI_DateTypeCode) publication
citedResponsibleParty: (CI_ResponsibleParty)
individualName: (inapplicable)
contactInfo: (CI_Contact)
onlineResource: (CI_OnlineResource)
linkage: https://www.ncei.noaa.gov/archive/accession/0216077/1.1
protocol: HTTPS
name: NCEI Accession 0216077 v1.1
description: published 2020-09-09T12:46:25Z
function: (CI_OnLineFunctionCode) download
role: (inapplicable)
return to top
dataQualityInfo: (DQ_DataQuality)
scope: (DQ_Scope)
level: (MD_ScopeCode) dataset
lineage: (LI_Lineage)
processStep: (LE_ProcessStep)
description: Parameter or Variable: protein concentrations (measured); Units: ratio to control (unitless); Observation Category: laboratory analysis; Sampling Instrument: manual sampling (SCUBA); Sampling and Analyzing Method: The isobaric tags for relative and absolute (protein) quantification (iTRAQ) approach of Ross et al. (2004 Mol Cell Proteomics) was used to label 12 experimental coral protein samples and two internal control samples that were used to normalize for batch-to-batch variation. Since there are only eight iTRAQ labels at present, this signifies that only eight proteins can be analyzed simultaneously. Given that 12 proteins were analyzed herein, two iTRAQ batches ("A" and "B" in the supplemental Excel file) were required to process all samples (6 experimental samples+1 normalizer/control sample in each batch).; Data Quality Method: An exhaustive series of quality control analyses were undertaken; please consult the attached methods file. Briefly, we only considered proteins sequenced in multiple batches that contained the iTRAQ tag.
return to top
metadataMaintenance: (MD_MaintenanceInformation)
maintenanceAndUpdateFrequency: (MD_MaintenanceFrequencyCode) asNeeded
maintenanceNote: Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
contact: (CI_ResponsibleParty)
organisationName: NOAA National Centers for Environmental Information
role: (CI_RoleCode) custodian
return to top
acquisitionInformation: (MI_AcquisitionInformation)
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: mass spectrometer
type: mass spectrometer
description: Instrument that measure the massess and relative concentrations of atoms and molecules
instrument: (MI_Instrument)
identifier: (MD_Identifier)
code: swimmer/diver
type: swimmer/diver
description: not an instrument - use as observation type
