National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) at Jarvis Island of the Pacific Remote Island Areas from 2016-05-16 to 2016-05-22 (NCEI Accession 0176560)
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title: National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) at Jarvis Island of the Pacific Remote Island Areas from 2016-05-16 to 2016-05-22 (NCEI Accession 0176560)
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abstract: The data described here resulted from benthic photo-quadrat surveys conducted along transects at stratified random sites at Jarvis Island of the Pacific Remote Island Areas in May 2016 as a part of Rapid Ecological Assessment (REA) surveys for corals and fish. Benthic habitat imagery were quantitatively analyzed using the web-based annotation tool CoralNet (Beijbom et al. 2016). Images were analyzed to produce three functional group levels of benthic cover: Tier 1 (e.g., hard coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Hard Coral = massive, branching, foliose, encrusting, etc.; Macroalgae = upright macroalgae, encrusting macroalgae, bluegreen macroalgae, and Halimeda, etc.), and Tier 3 (e.g., Hard Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). A stratified random sampling (StRS) design was employed to survey the coral reef ecosystems across the region. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats in the 0-30 m depth range. The stratification scheme included island, reef zone, and depth. Sampling effort was allocated based on strata area and sites were randomly located within strata. Sites were surveyed using photo-quadrats along transects to collect benthic imagery to ultimately produce estimates of relative abundance (benthic cover), frequency of occurrence, benthic community taxonomic composition and relative generic richness. The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than sampling more transects at a site. Therefore, site-level estimates and site to site comparisons should be used with caution.
purpose: The National Coral Reef Monitoring Program (NCRMP) details a long-term approach to provide an ecosystem perspective via monitoring climate, fish, benthic, and socioeconomic variables in a consistent and integrated manner. The NCRMP is intended to coordinate various Coral Reef Conservation Coral Reef Program (CRCP) biological, physical, and human dimensions activities into a cohesive NOAA-wide effort. Through the implementation of the NCRMP, NOAA will be able to clearly and concisely communicate results of national-scale monitoring to national, state, and territorial policy makers, resource managers, and the public on a periodic basis. The National Coral Reef Monitoring Program (NCRMP) is a framework for conducting sustained observations of biological, climate, and socioeconomic indicators at 10 priority coral reefs across the U.S. and its territories. This integrated approach will consolidate monitoring of coral reefs under a uniform method in the Pacific, Atlantic, Caribbean, and the Gulf of Mexico for the first time. NCRMP is funded by the CRCP and supported by NOAA Fisheries, NOAA National Centers for Coastal Ocean Science (NCCOS), and many other partners. The Ecosystem Sciences Division at NOAA Fisheries is leading biological monitoring in the U.S. Pacific Islands Region. The biological component of NCRMP in the Pacific provides a triennial ecological characterization at a broad spatial scale of general reef condition for reef fishes, corals and benthic habitat (i.e., fish species composition/density/size, benthic cover, and coral density/size/condition). Innovative analysis techniques are then used to develop products that give fellow scientists, managers, decision makers and the public a better understanding of a region’s resources and how they are changing over time.
credit: Funding Agency: NOAA Coral Reef Conservation Program
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keyword: PRIMNM
keyword: Pacific Remote Island Areas
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otherConstraints: Cite as: Ecosystem Sciences Division, Pacific Islands Fisheries Science Center (2018). National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) at Jarvis Island of the Pacific Remote Island Areas from 2016-05-16 to 2016-05-22 (NCEI Accession 0176560). https://www.ncei.noaa.gov/archive/accession/0176560. In NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division. National Coral Reef Monitoring Program: Benthic cover derived from analysis of images collected during stratified random surveys (StRS) across the Pacific Remote Island Areas. [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://doi.org/10.7289/v5154fbh. Accessed [date].
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useLimitation: Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.
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title: National Coral Reef Monitoring Program: Benthic cover derived from analysis of images collected during stratified random surveys (StRS) across the Pacific Remote Island Areas
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title: Coral Reef Conservation Program (2016). Documentation for NOAA's Coral Reef Conservation Program (CRCP) National Coral Reef Monitoring Program (NCRMP) data archived at NCEI (NCEI Accession 0157633). NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0157633.
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title: Pacific Islands Fisheries Science Center, 2021: National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across the Pacific Remote Island Areas since 2014, https://www.fisheries.noaa.gov/inport/item/36157.
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title: Towards automated annotation of benthic survey images: variability of human experts and operational modes of automation
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name: CRCP Benthic Cover PRIAs
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description: A stratified random sampling (StRS) design was employed to survey the coral reef ecosystems through the U.S. Pacific regions. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats. The stratification scheme included island, reef zone, and depth in all regions, as well as habitat structure type in the Main Hawaiian Islands. The habitat structure types included simple, complex, and coral-rich. Depth categories of shallow (0-6 m), mid (> 6-18m) and deep (>18-30 m) were also incorporated into the stratification scheme. Allocation of sampling effort was proportional to strata area. Sites were randomly selected within each stratum. A geographic information system (GIS) and digital spatial databases of benthic habitats (NOAA National Centers for Coastal Ocean Science NCCOS), reef zones (IKONOS satellite imagery, NDGC 1998) bathymetry (NDGC 1998, CREP benthic mapping data), and marine reserve boundaries (NOAA) were used to facilitate spatial delineation of the sampling survey domain, strata, and sample units. Map resolution was such that the survey domain could be overlain by a grid using a GIS with individual cells of size 50 m by 50 m in area. A two-stage sampling scheme following Cochran (1977) was employed to control for spatial variation in population parameters at scales smaller than the grid cell minimum mapping unit (2,500 m2). Grid cells containing hard-bottom reef habitats were designated as primary sample units (referred to as sites). Photoquadrat surveys were conducted by both the fish and benthic teams. Still photographs were collected to record the benthic community composition at predetermined points along the transect lines with a high-resolution digital camera mounted on a pole. Overall, 30 photoquadrat images are collected at each site. The fish team conducts these surveys along one 30 meter transect that spans the length of two stationary point count (SPC) cylinders used to assess fish abundance (30 images total, Rep A). Benthic substrate photos are taken at one meter intervals along the right hand side of the 30 m transect line. The benthic team conducts the photoquadrat surveys along two, independent 18 meter transects. Photos of the benthic substrate are taken at one meter intervals starting at meter 1, along the left hand side of each 18 meter transect (15 images/transect; 30 images total; Rep A and B). The benthic photoquadrat imagery that are collected as part of the Rapid Ecological Assessment (REA) surveys for coral and fish are analyzed by using the web-based annotation tool CoralNet (Beijbom et al. 2016) from 2015 to present. CPCe or CoralNet assigns 10 random points per photo and the benthic elements falling directly underneath each point is identified to three functional group levels: Tier 1 (e.g. hard coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g. Hard coral by morphology = massive, branching, foliose, encrusting, etc.; Macroalgae = upright macroalgae, encrusting macroalgae, bluegreen macroalgae, and Halimeda, etc.), and Tier 3 (e.g. Hard coral by genus and morphology; Macroalgae by genus or grouped genera). The detailed list of each functional group level or tier is included in the benthic image analysis classification scheme. Raw survey data includes unique image name and individual point observations identified at three functional group levels of benthic cover with the corresponding physical data which reflect the description of the site. The physical data for all records includes the following: region, island, site, date (day, month, year), latitude (dd), longitude (dd), reef zone, habitat type, depth category, minimum depth and maximum depth.
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acquisitionInformation: (MI_AcquisitionInformation)
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description: Title: NOAA Ship Flag: United States of America Vessel Type: Research Vessel; Ice Strengthened DOB: Aug 1988 IMO: 8835097 Former Name: ADVENTUROUS (2003) http://www.moc.noaa.gov/os/index.html Submitted to ICES on 2013-12-18.
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